Strain Fitness in Pseudomonas putida KT2440 around PP_4384

Experiment: Growth at pH9 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4383 and PP_4384 are separated by 12 nucleotidesPP_4384 and PP_4385 are separated by 36 nucleotidesPP_4385 and PP_4386 are separated by 47 nucleotides PP_4383: PP_4383 - Flagellar P-ring protein, at 4,976,782 to 4,977,891 _4383 PP_4384: PP_4384 - Flagellar L-ring protein, at 4,977,904 to 4,978,599 _4384 PP_4385: PP_4385 - flagellar basal-body rod protein FlgG, at 4,978,636 to 4,979,421 _4385 PP_4386: PP_4386 - flagellar basal-body rod protein FlgF, at 4,979,469 to 4,980,209 _4386 Position (kb) 4977 4978 4979Strain fitness (log2 ratio) -1 0 1at 4977.093 kb on + strand, within PP_4383at 4977.173 kb on + strand, within PP_4383at 4977.173 kb on + strand, within PP_4383at 4977.174 kb on - strand, within PP_4383at 4977.546 kb on + strand, within PP_4383at 4977.791 kb on - strandat 4977.791 kb on - strandat 4977.791 kb on - strandat 4977.791 kb on - strandat 4977.902 kb on - strandat 4977.986 kb on + strand, within PP_4384at 4977.986 kb on + strand, within PP_4384at 4977.986 kb on + strand, within PP_4384at 4977.986 kb on + strand, within PP_4384at 4977.987 kb on - strand, within PP_4384at 4977.987 kb on - strand, within PP_4384at 4977.987 kb on - strand, within PP_4384at 4977.987 kb on - strand, within PP_4384at 4978.141 kb on + strand, within PP_4384at 4978.228 kb on - strand, within PP_4384at 4978.230 kb on - strand, within PP_4384at 4978.269 kb on + strand, within PP_4384at 4978.269 kb on + strand, within PP_4384at 4978.269 kb on + strand, within PP_4384at 4978.269 kb on + strand, within PP_4384at 4978.270 kb on - strand, within PP_4384at 4978.424 kb on + strand, within PP_4384at 4978.425 kb on - strand, within PP_4384at 4978.452 kb on - strand, within PP_4384at 4978.452 kb on - strand, within PP_4384at 4978.452 kb on - strand, within PP_4384at 4978.452 kb on - strand, within PP_4384at 4978.508 kb on + strand, within PP_4384at 4978.508 kb on + strand, within PP_4384at 4978.509 kb on - strand, within PP_4384at 4978.512 kb on - strand, within PP_4384at 4978.606 kb on + strandat 4978.606 kb on + strandat 4978.606 kb on + strandat 4978.607 kb on - strandat 4978.607 kb on - strandat 4978.607 kb on - strandat 4978.637 kb on + strandat 4978.637 kb on + strandat 4978.637 kb on + strandat 4978.637 kb on + strandat 4978.637 kb on + strandat 4978.637 kb on + strandat 4978.638 kb on - strandat 4978.651 kb on - strandat 4978.703 kb on + strandat 4978.993 kb on - strand, within PP_4385at 4979.021 kb on + strand, within PP_4385at 4979.080 kb on - strand, within PP_4385at 4979.081 kb on + strand, within PP_4385at 4979.082 kb on - strand, within PP_4385at 4979.082 kb on - strand, within PP_4385at 4979.286 kb on - strand, within PP_4385at 4979.286 kb on - strand, within PP_4385at 4979.448 kb on - strandat 4979.519 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
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4,977,093 + PP_4383 0.28 +0.9
4,977,173 + PP_4383 0.35 +0.5
4,977,173 + PP_4383 0.35 +0.7
4,977,174 - PP_4383 0.35 -0.1
4,977,546 + PP_4383 0.69 +1.0
4,977,791 - +0.1
4,977,791 - +0.1
4,977,791 - +0.7
4,977,791 - -0.2
4,977,902 - -1.2
4,977,986 + PP_4384 0.12 +1.3
4,977,986 + PP_4384 0.12 +0.9
4,977,986 + PP_4384 0.12 +0.8
4,977,986 + PP_4384 0.12 -0.3
4,977,987 - PP_4384 0.12 +0.1
4,977,987 - PP_4384 0.12 +1.1
4,977,987 - PP_4384 0.12 +1.2
4,977,987 - PP_4384 0.12 +0.1
4,978,141 + PP_4384 0.34 +1.1
4,978,228 - PP_4384 0.47 +0.1
4,978,230 - PP_4384 0.47 +0.8
4,978,269 + PP_4384 0.52 +0.9
4,978,269 + PP_4384 0.52 +0.3
4,978,269 + PP_4384 0.52 -1.3
4,978,269 + PP_4384 0.52 +0.4
4,978,270 - PP_4384 0.53 +0.6
4,978,424 + PP_4384 0.75 +0.4
4,978,425 - PP_4384 0.75 +0.2
4,978,452 - PP_4384 0.79 +1.0
4,978,452 - PP_4384 0.79 +0.4
4,978,452 - PP_4384 0.79 +0.6
4,978,452 - PP_4384 0.79 +0.7
4,978,508 + PP_4384 0.87 +0.5
4,978,508 + PP_4384 0.87 -0.3
4,978,509 - PP_4384 0.87 +1.1
4,978,512 - PP_4384 0.87 +1.1
4,978,606 + +0.8
4,978,606 + +0.5
4,978,606 + +0.0
4,978,607 - +1.2
4,978,607 - +0.2
4,978,607 - +0.2
4,978,637 + +0.5
4,978,637 + -0.0
4,978,637 + +0.0
4,978,637 + +0.9
4,978,637 + +0.1
4,978,637 + +0.7
4,978,638 - -0.2
4,978,651 - +0.5
4,978,703 + +1.0
4,978,993 - PP_4385 0.45 +1.3
4,979,021 + PP_4385 0.49 -0.7
4,979,080 - PP_4385 0.56 +1.0
4,979,081 + PP_4385 0.57 +0.7
4,979,082 - PP_4385 0.57 +0.4
4,979,082 - PP_4385 0.57 +0.9
4,979,286 - PP_4385 0.83 +0.6
4,979,286 - PP_4385 0.83 +0.5
4,979,448 - -0.2
4,979,519 + +1.1

Or see this region's nucleotide sequence