Experiment: Growth at pH9 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4369 and PP_4370 are separated by 15 nucleotides PP_4370 and PP_4371 are separated by 263 nucleotides
PP_4369: PP_4369 - Flagellar M-ring protein, at 4,958,692 to 4,960,470
_4369
PP_4370: PP_4370 - Flagellar hook-basal body complex protein FliE, at 4,960,486 to 4,960,818
_4370
PP_4371: PP_4371 - two component system AtoC DNA-binding transcriptional activator, at 4,961,082 to 4,962,437
_4371
Position (kb) 4960
4961 Strain fitness (log2 ratio) -2
-1
0
1 at 4959.635 kb on + strand, within PP_4369 at 4959.635 kb on + strand, within PP_4369 at 4959.636 kb on - strand, within PP_4369 at 4959.636 kb on - strand, within PP_4369 at 4959.636 kb on - strand, within PP_4369 at 4959.710 kb on + strand, within PP_4369 at 4959.710 kb on + strand, within PP_4369 at 4959.882 kb on - strand, within PP_4369 at 4959.996 kb on + strand, within PP_4369 at 4960.197 kb on + strand, within PP_4369 at 4960.199 kb on + strand, within PP_4369 at 4960.200 kb on - strand, within PP_4369 at 4960.200 kb on - strand, within PP_4369 at 4960.200 kb on - strand, within PP_4369 at 4960.200 kb on - strand, within PP_4369 at 4960.200 kb on - strand, within PP_4369 at 4960.200 kb on - strand, within PP_4369 at 4960.265 kb on + strand, within PP_4369 at 4960.475 kb on + strand at 4960.475 kb on + strand at 4960.476 kb on - strand at 4960.476 kb on - strand at 4960.514 kb on + strand at 4960.515 kb on - strand at 4960.538 kb on - strand, within PP_4370 at 4960.538 kb on - strand, within PP_4370 at 4960.738 kb on + strand, within PP_4370 at 4960.739 kb on - strand, within PP_4370 at 4960.739 kb on - strand, within PP_4370 at 4960.739 kb on - strand, within PP_4370 at 4960.739 kb on - strand, within PP_4370 at 4960.877 kb on + strand at 4961.422 kb on + strand, within PP_4371 at 4961.422 kb on + strand, within PP_4371 at 4961.422 kb on + strand, within PP_4371 at 4961.422 kb on + strand, within PP_4371 at 4961.423 kb on - strand, within PP_4371 at 4961.423 kb on - strand, within PP_4371 at 4961.423 kb on - strand, within PP_4371 at 4961.423 kb on - strand, within PP_4371 at 4961.423 kb on - strand, within PP_4371 at 4961.423 kb on - strand, within PP_4371 at 4961.581 kb on + strand, within PP_4371 at 4961.581 kb on + strand, within PP_4371 at 4961.581 kb on + strand, within PP_4371 at 4961.582 kb on - strand, within PP_4371 at 4961.582 kb on - strand, within PP_4371 at 4961.582 kb on - strand, within PP_4371 at 4961.651 kb on + strand, within PP_4371 at 4961.651 kb on + strand, within PP_4371 at 4961.652 kb on - strand, within PP_4371 at 4961.652 kb on - strand, within PP_4371
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose remove 4,959,635 + PP_4369 0.53 +1.0 4,959,635 + PP_4369 0.53 -0.1 4,959,636 - PP_4369 0.53 +1.0 4,959,636 - PP_4369 0.53 +0.6 4,959,636 - PP_4369 0.53 +0.5 4,959,710 + PP_4369 0.57 +0.6 4,959,710 + PP_4369 0.57 +0.4 4,959,882 - PP_4369 0.67 +0.6 4,959,996 + PP_4369 0.73 +0.3 4,960,197 + PP_4369 0.85 -0.3 4,960,199 + PP_4369 0.85 +0.9 4,960,200 - PP_4369 0.85 +0.2 4,960,200 - PP_4369 0.85 +0.4 4,960,200 - PP_4369 0.85 -0.3 4,960,200 - PP_4369 0.85 +0.5 4,960,200 - PP_4369 0.85 +0.3 4,960,200 - PP_4369 0.85 +0.2 4,960,265 + PP_4369 0.88 +0.5 4,960,475 + +0.8 4,960,475 + +0.1 4,960,476 - +0.6 4,960,476 - +0.8 4,960,514 + -0.9 4,960,515 - +0.5 4,960,538 - PP_4370 0.16 +0.8 4,960,538 - PP_4370 0.16 +0.8 4,960,738 + PP_4370 0.76 +0.5 4,960,739 - PP_4370 0.76 -0.2 4,960,739 - PP_4370 0.76 -0.1 4,960,739 - PP_4370 0.76 +0.9 4,960,739 - PP_4370 0.76 +0.4 4,960,877 + +0.6 4,961,422 + PP_4371 0.25 +0.5 4,961,422 + PP_4371 0.25 -1.9 4,961,422 + PP_4371 0.25 -2.6 4,961,422 + PP_4371 0.25 +1.0 4,961,423 - PP_4371 0.25 +0.9 4,961,423 - PP_4371 0.25 +0.3 4,961,423 - PP_4371 0.25 +0.1 4,961,423 - PP_4371 0.25 +0.8 4,961,423 - PP_4371 0.25 +0.2 4,961,423 - PP_4371 0.25 +0.6 4,961,581 + PP_4371 0.37 +0.7 4,961,581 + PP_4371 0.37 -0.3 4,961,581 + PP_4371 0.37 +0.4 4,961,582 - PP_4371 0.37 -0.2 4,961,582 - PP_4371 0.37 -2.4 4,961,582 - PP_4371 0.37 -0.3 4,961,651 + PP_4371 0.42 +0.5 4,961,651 + PP_4371 0.42 -0.2 4,961,652 - PP_4371 0.42 -0.2 4,961,652 - PP_4371 0.42 -0.3
Or see this region's nucleotide sequence