Strain Fitness in Pseudomonas putida KT2440 around PP_4331

Experiment: Growth at pH9 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4330 and PP_4331 are separated by 107 nucleotidesPP_4331 and PP_4332 are separated by 1 nucleotidesPP_4332 and PP_4333 are separated by 41 nucleotides PP_4330: PP_4330 - putative toxin-related protein, at 4,919,592 to 4,922,273 _4330 PP_4331: PP_4331 - conserved protein of unknown function, at 4,922,381 to 4,922,776 _4331 PP_4332: PP_4332 - Chemotaxis protein CheW, at 4,922,778 to 4,923,257 _4332 PP_4333: PP_4333 - CheW domain protein, at 4,923,299 to 4,924,195 _4333 Position (kb) 4922 4923Strain fitness (log2 ratio) -3 -2 -1 0 1at 4921.421 kb on + strand, within PP_4330at 4921.454 kb on + strand, within PP_4330at 4921.455 kb on - strand, within PP_4330at 4921.455 kb on - strand, within PP_4330at 4921.512 kb on + strand, within PP_4330at 4921.512 kb on + strand, within PP_4330at 4921.512 kb on + strand, within PP_4330at 4921.513 kb on - strand, within PP_4330at 4921.513 kb on - strand, within PP_4330at 4921.554 kb on + strand, within PP_4330at 4921.554 kb on + strand, within PP_4330at 4921.604 kb on - strand, within PP_4330at 4921.604 kb on - strand, within PP_4330at 4921.654 kb on - strand, within PP_4330at 4921.654 kb on - strand, within PP_4330at 4921.657 kb on - strand, within PP_4330at 4921.665 kb on + strand, within PP_4330at 4921.665 kb on + strand, within PP_4330at 4921.707 kb on + strand, within PP_4330at 4921.707 kb on + strand, within PP_4330at 4921.707 kb on + strand, within PP_4330at 4921.708 kb on - strand, within PP_4330at 4921.708 kb on - strand, within PP_4330at 4921.708 kb on - strand, within PP_4330at 4921.708 kb on - strand, within PP_4330at 4921.764 kb on + strand, within PP_4330at 4921.764 kb on + strand, within PP_4330at 4921.764 kb on + strand, within PP_4330at 4921.764 kb on + strand, within PP_4330at 4921.765 kb on - strand, within PP_4330at 4921.765 kb on - strand, within PP_4330at 4921.995 kb on + strand, within PP_4330at 4921.995 kb on + strand, within PP_4330at 4921.996 kb on - strand, within PP_4330at 4922.043 kb on + strandat 4922.062 kb on - strandat 4922.108 kb on - strandat 4922.169 kb on + strandat 4922.169 kb on + strandat 4922.170 kb on - strandat 4922.198 kb on + strandat 4922.199 kb on - strandat 4922.199 kb on - strandat 4922.287 kb on + strandat 4922.288 kb on - strandat 4922.458 kb on + strand, within PP_4331at 4922.610 kb on + strand, within PP_4331at 4922.611 kb on - strand, within PP_4331at 4922.706 kb on + strand, within PP_4331at 4922.706 kb on + strand, within PP_4331at 4922.706 kb on + strand, within PP_4331at 4922.707 kb on - strand, within PP_4331at 4922.707 kb on - strand, within PP_4331at 4922.707 kb on - strand, within PP_4331at 4922.707 kb on - strand, within PP_4331at 4922.707 kb on - strand, within PP_4331at 4922.768 kb on + strandat 4922.769 kb on - strandat 4922.877 kb on + strand, within PP_4332at 4923.106 kb on + strand, within PP_4332at 4923.106 kb on + strand, within PP_4332at 4923.107 kb on - strand, within PP_4332at 4923.206 kb on + strand, within PP_4332at 4923.206 kb on + strand, within PP_4332at 4923.263 kb on + strandat 4923.502 kb on - strand, within PP_4333at 4923.502 kb on - strand, within PP_4333at 4923.502 kb on - strand, within PP_4333at 4923.522 kb on + strand, within PP_4333at 4923.522 kb on + strand, within PP_4333at 4923.522 kb on + strand, within PP_4333at 4923.523 kb on - strand, within PP_4333at 4923.678 kb on + strand, within PP_4333at 4923.678 kb on + strand, within PP_4333at 4923.678 kb on + strand, within PP_4333at 4923.678 kb on + strand, within PP_4333at 4923.678 kb on + strand, within PP_4333at 4923.679 kb on - strand, within PP_4333

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
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4,921,421 + PP_4330 0.68 +0.1
4,921,454 + PP_4330 0.69 +0.5
4,921,455 - PP_4330 0.69 +0.8
4,921,455 - PP_4330 0.69 +0.6
4,921,512 + PP_4330 0.72 +0.7
4,921,512 + PP_4330 0.72 +0.3
4,921,512 + PP_4330 0.72 -0.1
4,921,513 - PP_4330 0.72 -0.2
4,921,513 - PP_4330 0.72 -1.0
4,921,554 + PP_4330 0.73 -0.5
4,921,554 + PP_4330 0.73 +0.3
4,921,604 - PP_4330 0.75 -1.6
4,921,604 - PP_4330 0.75 +0.4
4,921,654 - PP_4330 0.77 +0.6
4,921,654 - PP_4330 0.77 -0.9
4,921,657 - PP_4330 0.77 +0.4
4,921,665 + PP_4330 0.77 +1.0
4,921,665 + PP_4330 0.77 +0.8
4,921,707 + PP_4330 0.79 -0.3
4,921,707 + PP_4330 0.79 +0.7
4,921,707 + PP_4330 0.79 +0.0
4,921,708 - PP_4330 0.79 +0.1
4,921,708 - PP_4330 0.79 -1.4
4,921,708 - PP_4330 0.79 +0.3
4,921,708 - PP_4330 0.79 +0.4
4,921,764 + PP_4330 0.81 -0.1
4,921,764 + PP_4330 0.81 -0.9
4,921,764 + PP_4330 0.81 -0.4
4,921,764 + PP_4330 0.81 -1.9
4,921,765 - PP_4330 0.81 +0.4
4,921,765 - PP_4330 0.81 -0.2
4,921,995 + PP_4330 0.90 +0.1
4,921,995 + PP_4330 0.90 -0.3
4,921,996 - PP_4330 0.90 -0.7
4,922,043 + -0.3
4,922,062 - -0.8
4,922,108 - -0.2
4,922,169 + +0.5
4,922,169 + +0.9
4,922,170 - -2.9
4,922,198 + -0.3
4,922,199 - -0.6
4,922,199 - -0.2
4,922,287 + -1.5
4,922,288 - -3.4
4,922,458 + PP_4331 0.19 +0.1
4,922,610 + PP_4331 0.58 +0.7
4,922,611 - PP_4331 0.58 +0.2
4,922,706 + PP_4331 0.82 +0.7
4,922,706 + PP_4331 0.82 +0.1
4,922,706 + PP_4331 0.82 +0.3
4,922,707 - PP_4331 0.82 +0.1
4,922,707 - PP_4331 0.82 +0.2
4,922,707 - PP_4331 0.82 +0.9
4,922,707 - PP_4331 0.82 +0.6
4,922,707 - PP_4331 0.82 +0.5
4,922,768 + -0.0
4,922,769 - +0.2
4,922,877 + PP_4332 0.21 +1.0
4,923,106 + PP_4332 0.68 -0.0
4,923,106 + PP_4332 0.68 -0.0
4,923,107 - PP_4332 0.69 -1.9
4,923,206 + PP_4332 0.89 -0.7
4,923,206 + PP_4332 0.89 -0.1
4,923,263 + +0.7
4,923,502 - PP_4333 0.23 -0.4
4,923,502 - PP_4333 0.23 -0.5
4,923,502 - PP_4333 0.23 +0.6
4,923,522 + PP_4333 0.25 +0.6
4,923,522 + PP_4333 0.25 -0.2
4,923,522 + PP_4333 0.25 +0.2
4,923,523 - PP_4333 0.25 -0.2
4,923,678 + PP_4333 0.42 -0.7
4,923,678 + PP_4333 0.42 +0.2
4,923,678 + PP_4333 0.42 -0.2
4,923,678 + PP_4333 0.42 +0.8
4,923,678 + PP_4333 0.42 +0.1
4,923,679 - PP_4333 0.42 +0.0

Or see this region's nucleotide sequence