Experiment: Growth at pH9 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5648 and PP_3928 are separated by 117 nucleotides PP_3928 and PP_3929 are separated by 162 nucleotides PP_3929 and PP_3930 are separated by 73 nucleotides PP_3930 and PP_3931 are separated by 126 nucleotides
PP_5648: PP_5648 - conserved exported protein of unknown function, at 4,433,094 to 4,433,444
_5648
PP_3928: PP_3928 - conserved exported protein of unknown function, at 4,433,562 to 4,433,852
_3928
PP_3929: PP_3929 - conserved protein of unknown function, at 4,434,015 to 4,434,281
_3929
PP_3930: PP_3930 - conserved exported protein of unknown function, at 4,434,355 to 4,434,747
_3930
PP_3931: PP_3931 - putative transporter, at 4,434,874 to 4,436,703
_3931
Position (kb) 4434
4435 Strain fitness (log2 ratio) -1
0
1
2 at 4433.048 kb on - strand at 4433.155 kb on + strand, within PP_5648 at 4433.158 kb on + strand, within PP_5648 at 4433.159 kb on - strand, within PP_5648 at 4433.220 kb on - strand, within PP_5648 at 4433.258 kb on - strand, within PP_5648 at 4433.534 kb on + strand at 4433.574 kb on + strand at 4433.574 kb on + strand at 4433.575 kb on - strand at 4433.575 kb on - strand at 4433.575 kb on - strand at 4433.575 kb on - strand at 4433.703 kb on + strand, within PP_3928 at 4433.796 kb on + strand, within PP_3928 at 4433.796 kb on + strand, within PP_3928 at 4433.796 kb on + strand, within PP_3928 at 4433.796 kb on + strand, within PP_3928 at 4433.796 kb on + strand, within PP_3928 at 4433.797 kb on - strand, within PP_3928 at 4433.797 kb on - strand, within PP_3928 at 4433.797 kb on - strand, within PP_3928 at 4433.797 kb on - strand, within PP_3928 at 4433.797 kb on - strand, within PP_3928 at 4433.797 kb on - strand, within PP_3928 at 4433.797 kb on - strand, within PP_3928 at 4433.797 kb on - strand, within PP_3928 at 4433.928 kb on - strand at 4433.928 kb on - strand at 4433.928 kb on - strand at 4434.054 kb on - strand, within PP_3929 at 4434.073 kb on + strand, within PP_3929 at 4434.090 kb on + strand, within PP_3929 at 4434.091 kb on - strand, within PP_3929 at 4434.091 kb on - strand, within PP_3929 at 4434.092 kb on + strand, within PP_3929 at 4434.093 kb on - strand, within PP_3929 at 4434.169 kb on - strand, within PP_3929 at 4434.270 kb on + strand at 4434.270 kb on + strand at 4434.270 kb on + strand at 4434.271 kb on - strand at 4434.273 kb on + strand at 4434.273 kb on + strand at 4434.273 kb on + strand at 4434.273 kb on + strand at 4434.274 kb on - strand at 4434.274 kb on - strand at 4434.351 kb on + strand at 4434.395 kb on + strand, within PP_3930 at 4434.395 kb on + strand, within PP_3930 at 4434.396 kb on - strand, within PP_3930 at 4434.396 kb on - strand at 4434.626 kb on + strand, within PP_3930 at 4434.810 kb on + strand at 4434.832 kb on + strand at 4435.141 kb on - strand, within PP_3931 at 4435.160 kb on + strand, within PP_3931 at 4435.161 kb on - strand, within PP_3931
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose remove 4,433,048 - +0.3 4,433,155 + PP_5648 0.17 +0.8 4,433,158 + PP_5648 0.18 +1.0 4,433,159 - PP_5648 0.19 +0.8 4,433,220 - PP_5648 0.36 +0.6 4,433,258 - PP_5648 0.47 +0.7 4,433,534 + -0.6 4,433,574 + -0.4 4,433,574 + -0.7 4,433,575 - -1.0 4,433,575 - -1.7 4,433,575 - +0.7 4,433,575 - -0.1 4,433,703 + PP_3928 0.48 +0.0 4,433,796 + PP_3928 0.80 +0.1 4,433,796 + PP_3928 0.80 -0.2 4,433,796 + PP_3928 0.80 +0.3 4,433,796 + PP_3928 0.80 -0.8 4,433,796 + PP_3928 0.80 -0.2 4,433,797 - PP_3928 0.81 +0.6 4,433,797 - PP_3928 0.81 +0.5 4,433,797 - PP_3928 0.81 +0.7 4,433,797 - PP_3928 0.81 +0.1 4,433,797 - PP_3928 0.81 +1.1 4,433,797 - PP_3928 0.81 +0.5 4,433,797 - PP_3928 0.81 +0.6 4,433,797 - PP_3928 0.81 +1.1 4,433,928 - +0.6 4,433,928 - +0.3 4,433,928 - +1.0 4,434,054 - PP_3929 0.15 +1.9 4,434,073 + PP_3929 0.22 +0.5 4,434,090 + PP_3929 0.28 +1.0 4,434,091 - PP_3929 0.28 -0.2 4,434,091 - PP_3929 0.28 +0.4 4,434,092 + PP_3929 0.29 -0.9 4,434,093 - PP_3929 0.29 +1.2 4,434,169 - PP_3929 0.58 -0.8 4,434,270 + +0.0 4,434,270 + +0.2 4,434,270 + -0.5 4,434,271 - -0.4 4,434,273 + +0.9 4,434,273 + +0.2 4,434,273 + -0.2 4,434,273 + -1.0 4,434,274 - +0.5 4,434,274 - -0.3 4,434,351 + -0.3 4,434,395 + PP_3930 0.10 +0.6 4,434,395 + PP_3930 0.10 +1.5 4,434,396 - PP_3930 0.10 -0.2 4,434,396 - +0.5 4,434,626 + PP_3930 0.69 -0.6 4,434,810 + +0.7 4,434,832 + -0.8 4,435,141 - PP_3931 0.15 +1.0 4,435,160 + PP_3931 0.16 +0.0 4,435,161 - PP_3931 0.16 -1.2
Or see this region's nucleotide sequence