Experiment: Growth at pH9 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3765 and PP_3766 are separated by 224 nucleotides PP_3766 and PP_3767 are separated by 97 nucleotides PP_3767 and PP_3768 are separated by 58 nucleotides
PP_3765: PP_3765 - H-NS family protein MvaT, at 4,295,722 to 4,296,081
_3765
PP_3766: PP_3766 - Lactoylglutathione lyase, at 4,296,306 to 4,296,833
_3766
PP_3767: PP_3767 - conserved protein of unknown function, at 4,296,931 to 4,297,173
_3767
PP_3768: PP_3768 - putative shikimate 5-dehydrogenase, at 4,297,232 to 4,298,053
_3768
Position (kb) 4296
4297
4298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4295.968 kb on + strand, within PP_3765 at 4295.969 kb on - strand, within PP_3765 at 4295.969 kb on - strand, within PP_3765 at 4296.046 kb on + strand at 4296.047 kb on - strand at 4296.047 kb on - strand at 4296.047 kb on - strand at 4296.062 kb on + strand at 4296.095 kb on + strand at 4296.095 kb on + strand at 4296.095 kb on + strand at 4296.096 kb on - strand at 4296.096 kb on - strand at 4296.096 kb on - strand at 4296.131 kb on - strand at 4296.151 kb on - strand at 4296.244 kb on + strand at 4296.244 kb on + strand at 4296.245 kb on - strand at 4296.245 kb on - strand at 4296.429 kb on + strand, within PP_3766 at 4296.495 kb on + strand, within PP_3766 at 4296.495 kb on + strand, within PP_3766 at 4296.627 kb on + strand, within PP_3766 at 4296.831 kb on + strand at 4296.887 kb on + strand at 4296.887 kb on + strand at 4296.887 kb on + strand at 4296.887 kb on + strand at 4296.887 kb on + strand at 4296.888 kb on - strand at 4296.888 kb on - strand at 4296.888 kb on - strand at 4296.888 kb on - strand at 4296.889 kb on + strand at 4296.889 kb on + strand at 4296.889 kb on + strand at 4296.889 kb on + strand at 4296.889 kb on + strand at 4296.889 kb on + strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.898 kb on - strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.911 kb on - strand at 4296.924 kb on - strand at 4297.010 kb on - strand, within PP_3767 at 4297.059 kb on + strand, within PP_3767 at 4297.059 kb on + strand, within PP_3767 at 4297.059 kb on + strand, within PP_3767 at 4297.060 kb on - strand, within PP_3767 at 4297.060 kb on - strand, within PP_3767 at 4297.060 kb on - strand, within PP_3767 at 4297.060 kb on - strand, within PP_3767 at 4297.226 kb on + strand at 4297.226 kb on + strand at 4297.226 kb on + strand at 4297.226 kb on + strand at 4297.226 kb on + strand at 4297.226 kb on + strand at 4297.227 kb on - strand at 4297.227 kb on - strand at 4297.227 kb on - strand at 4297.227 kb on - strand at 4297.227 kb on - strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.230 kb on - strand at 4297.230 kb on - strand at 4297.230 kb on - strand at 4297.233 kb on + strand at 4297.233 kb on + strand at 4297.233 kb on + strand at 4297.233 kb on + strand at 4297.237 kb on + strand at 4297.237 kb on + strand at 4297.296 kb on + strand at 4297.746 kb on + strand, within PP_3768 at 4297.746 kb on + strand, within PP_3768 at 4297.746 kb on + strand, within PP_3768 at 4297.746 kb on + strand, within PP_3768 at 4297.747 kb on - strand, within PP_3768 at 4297.848 kb on + strand, within PP_3768 at 4297.848 kb on + strand, within PP_3768 at 4297.849 kb on - strand, within PP_3768 at 4297.935 kb on + strand, within PP_3768 at 4297.938 kb on + strand, within PP_3768 at 4297.939 kb on - strand, within PP_3768 at 4297.939 kb on - strand, within PP_3768 at 4297.962 kb on + strand, within PP_3768 at 4298.053 kb on + strand at 4298.054 kb on - strand at 4298.054 kb on - strand at 4298.084 kb on + strand at 4298.120 kb on + strand at 4298.120 kb on + strand at 4298.131 kb on + strand at 4298.132 kb on - strand at 4298.170 kb on + strand at 4298.170 kb on + strand at 4298.171 kb on - strand at 4298.171 kb on - strand at 4298.171 kb on - strand at 4298.173 kb on + strand at 4298.173 kb on + strand at 4298.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose remove 4,295,968 + PP_3765 0.68 -1.4 4,295,969 - PP_3765 0.69 -0.6 4,295,969 - PP_3765 0.69 -0.1 4,296,046 + +0.6 4,296,047 - -0.1 4,296,047 - -0.1 4,296,047 - +1.2 4,296,062 + +0.2 4,296,095 + -0.2 4,296,095 + -0.8 4,296,095 + +0.4 4,296,096 - +0.2 4,296,096 - -0.1 4,296,096 - +1.7 4,296,131 - +0.6 4,296,151 - -1.5 4,296,244 + +0.2 4,296,244 + +0.9 4,296,245 - +0.5 4,296,245 - +0.4 4,296,429 + PP_3766 0.23 +0.1 4,296,495 + PP_3766 0.36 +0.4 4,296,495 + PP_3766 0.36 -0.3 4,296,627 + PP_3766 0.61 +0.7 4,296,831 + -0.9 4,296,887 + -0.2 4,296,887 + -0.1 4,296,887 + -0.1 4,296,887 + +1.5 4,296,887 + -0.3 4,296,888 - -0.8 4,296,888 - +0.2 4,296,888 - -0.1 4,296,888 - -0.4 4,296,889 + -0.5 4,296,889 + -0.6 4,296,889 + +0.3 4,296,889 + +0.1 4,296,889 + +0.2 4,296,889 + +1.3 4,296,890 - -0.1 4,296,890 - +0.8 4,296,890 - +0.4 4,296,890 - -0.6 4,296,890 - -0.8 4,296,890 - +0.9 4,296,890 - +0.0 4,296,898 - +0.2 4,296,910 + -0.0 4,296,910 + -2.0 4,296,910 + +0.5 4,296,910 + -0.1 4,296,910 + -0.2 4,296,910 + -1.8 4,296,910 + +0.7 4,296,911 - +0.8 4,296,924 - -0.1 4,297,010 - PP_3767 0.33 +0.3 4,297,059 + PP_3767 0.53 +0.4 4,297,059 + PP_3767 0.53 +0.2 4,297,059 + PP_3767 0.53 +1.4 4,297,060 - PP_3767 0.53 +0.9 4,297,060 - PP_3767 0.53 +0.3 4,297,060 - PP_3767 0.53 +0.1 4,297,060 - PP_3767 0.53 +0.2 4,297,226 + -0.2 4,297,226 + -1.3 4,297,226 + +0.8 4,297,226 + -0.2 4,297,226 + -1.4 4,297,226 + +0.0 4,297,227 - -0.0 4,297,227 - +0.5 4,297,227 - -0.1 4,297,227 - +1.1 4,297,227 - +0.1 4,297,229 + -0.3 4,297,229 + -0.1 4,297,229 + -0.3 4,297,229 + +0.6 4,297,229 + +0.6 4,297,229 + +0.6 4,297,229 + +1.3 4,297,229 + -0.7 4,297,229 + +0.5 4,297,229 + +1.3 4,297,230 - +0.5 4,297,230 - +0.2 4,297,230 - -0.4 4,297,233 + -0.3 4,297,233 + -0.4 4,297,233 + +1.0 4,297,233 + +0.8 4,297,237 + -2.8 4,297,237 + -0.5 4,297,296 + -0.2 4,297,746 + PP_3768 0.63 -0.0 4,297,746 + PP_3768 0.63 +0.5 4,297,746 + PP_3768 0.63 -0.1 4,297,746 + PP_3768 0.63 -0.6 4,297,747 - PP_3768 0.63 +0.9 4,297,848 + PP_3768 0.75 +0.5 4,297,848 + PP_3768 0.75 +0.6 4,297,849 - PP_3768 0.75 -0.8 4,297,935 + PP_3768 0.86 +0.1 4,297,938 + PP_3768 0.86 -0.5 4,297,939 - PP_3768 0.86 -1.1 4,297,939 - PP_3768 0.86 +0.5 4,297,962 + PP_3768 0.89 +0.2 4,298,053 + -0.1 4,298,054 - +1.1 4,298,054 - -0.4 4,298,084 + +1.5 4,298,120 + +0.1 4,298,120 + -0.5 4,298,131 + -0.9 4,298,132 - +0.5 4,298,170 + +3.5 4,298,170 + -0.3 4,298,171 - +0.0 4,298,171 - -0.5 4,298,171 - -0.0 4,298,173 + -0.0 4,298,173 + -0.5 4,298,173 + +0.6
Or see this region's nucleotide sequence