Strain Fitness in Pseudomonas putida KT2440 around PP_3685

Experiment: Growth at pH9 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5611 and PP_3685 are separated by 207 nucleotidesPP_3685 and PP_5612 are separated by 110 nucleotides PP_5611: PP_5611 - putative transcriptional regulator, at 4,188,738 to 4,189,556 _5611 PP_3685: PP_3685 - conserved protein of unknown function, at 4,189,764 to 4,189,946 _3685 PP_5612: PP_5612 - protein of unknown function, at 4,190,057 to 4,190,668 _5612 Position (kb) 4189 4190Strain fitness (log2 ratio) -1 0 1at 4188.812 kb on - strandat 4188.846 kb on + strand, within PP_5611at 4188.876 kb on + strand, within PP_5611at 4188.927 kb on + strand, within PP_5611at 4188.928 kb on - strand, within PP_5611at 4188.928 kb on - strand, within PP_5611at 4189.006 kb on - strand, within PP_5611at 4189.006 kb on - strand, within PP_5611at 4189.084 kb on + strand, within PP_5611at 4189.101 kb on + strand, within PP_5611at 4189.122 kb on + strand, within PP_5611at 4189.122 kb on + strand, within PP_5611at 4189.122 kb on + strand, within PP_5611at 4189.123 kb on - strandat 4189.123 kb on - strand, within PP_5611at 4189.123 kb on - strand, within PP_5611at 4189.123 kb on - strand, within PP_5611at 4189.123 kb on - strand, within PP_5611at 4189.124 kb on + strand, within PP_5611at 4189.125 kb on - strand, within PP_5611at 4189.163 kb on + strand, within PP_5611at 4189.164 kb on - strand, within PP_5611at 4189.220 kb on + strand, within PP_5611at 4189.242 kb on + strand, within PP_5611at 4189.242 kb on + strand, within PP_5611at 4189.243 kb on - strand, within PP_5611at 4189.243 kb on - strand, within PP_5611at 4189.243 kb on - strand, within PP_5611at 4189.341 kb on - strand, within PP_5611at 4189.392 kb on + strand, within PP_5611at 4189.392 kb on + strand, within PP_5611at 4189.393 kb on - strand, within PP_5611at 4189.393 kb on - strand, within PP_5611at 4189.393 kb on - strand, within PP_5611at 4189.393 kb on - strand, within PP_5611at 4189.468 kb on + strand, within PP_5611at 4189.468 kb on + strand, within PP_5611at 4189.469 kb on - strand, within PP_5611at 4189.544 kb on - strandat 4189.558 kb on + strandat 4189.558 kb on + strandat 4189.558 kb on + strandat 4189.558 kb on + strandat 4189.558 kb on + strandat 4189.559 kb on - strandat 4189.559 kb on - strandat 4189.565 kb on + strandat 4189.565 kb on + strandat 4189.601 kb on + strandat 4189.616 kb on - strandat 4189.737 kb on + strandat 4189.762 kb on + strandat 4189.762 kb on + strandat 4189.762 kb on + strandat 4189.763 kb on - strandat 4189.793 kb on + strand, within PP_3685at 4189.793 kb on + strand, within PP_3685at 4189.808 kb on + strand, within PP_3685at 4189.844 kb on - strand, within PP_3685at 4189.844 kb on - strand, within PP_3685at 4189.844 kb on - strand, within PP_3685at 4189.844 kb on - strand, within PP_3685at 4189.864 kb on + strand, within PP_3685at 4189.871 kb on - strand, within PP_3685at 4189.871 kb on - strand, within PP_3685at 4189.944 kb on + strandat 4189.944 kb on + strandat 4189.944 kb on + strandat 4189.944 kb on + strandat 4189.944 kb on + strandat 4189.944 kb on + strandat 4189.959 kb on - strandat 4189.959 kb on - strandat 4190.145 kb on + strand, within PP_5612at 4190.145 kb on + strand, within PP_5612at 4190.146 kb on - strand, within PP_5612at 4190.146 kb on - strand, within PP_5612at 4190.308 kb on - strand, within PP_5612at 4190.311 kb on + strand, within PP_5612at 4190.312 kb on - strand, within PP_5612at 4190.349 kb on - strand, within PP_5612at 4190.403 kb on - strand, within PP_5612at 4190.457 kb on + strand, within PP_5612at 4190.500 kb on - strand, within PP_5612at 4190.545 kb on - strand, within PP_5612at 4190.691 kb on + strandat 4190.736 kb on + strandat 4190.737 kb on - strandat 4190.737 kb on - strandat 4190.737 kb on - strandat 4190.820 kb on + strandat 4190.821 kb on - strandat 4190.826 kb on + strandat 4190.826 kb on + strandat 4190.827 kb on - strandat 4190.827 kb on - strandat 4190.942 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
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4,188,812 - -0.3
4,188,846 + PP_5611 0.13 -0.6
4,188,876 + PP_5611 0.17 +0.6
4,188,927 + PP_5611 0.23 +0.3
4,188,928 - PP_5611 0.23 -0.2
4,188,928 - PP_5611 0.23 +0.9
4,189,006 - PP_5611 0.33 +1.2
4,189,006 - PP_5611 0.33 +0.4
4,189,084 + PP_5611 0.42 -0.4
4,189,101 + PP_5611 0.44 -0.3
4,189,122 + PP_5611 0.47 -0.2
4,189,122 + PP_5611 0.47 +0.4
4,189,122 + PP_5611 0.47 -0.5
4,189,123 - +0.2
4,189,123 - PP_5611 0.47 -0.4
4,189,123 - PP_5611 0.47 +0.3
4,189,123 - PP_5611 0.47 +0.9
4,189,123 - PP_5611 0.47 +0.8
4,189,124 + PP_5611 0.47 -0.3
4,189,125 - PP_5611 0.47 +0.2
4,189,163 + PP_5611 0.52 +0.0
4,189,164 - PP_5611 0.52 -0.6
4,189,220 + PP_5611 0.59 +0.9
4,189,242 + PP_5611 0.62 -0.0
4,189,242 + PP_5611 0.62 -0.1
4,189,243 - PP_5611 0.62 +1.4
4,189,243 - PP_5611 0.62 -0.9
4,189,243 - PP_5611 0.62 +0.0
4,189,341 - PP_5611 0.74 -0.8
4,189,392 + PP_5611 0.80 -0.1
4,189,392 + PP_5611 0.80 -0.5
4,189,393 - PP_5611 0.80 -0.5
4,189,393 - PP_5611 0.80 -0.3
4,189,393 - PP_5611 0.80 +0.6
4,189,393 - PP_5611 0.80 -1.0
4,189,468 + PP_5611 0.89 +0.9
4,189,468 + PP_5611 0.89 +0.5
4,189,469 - PP_5611 0.89 +0.5
4,189,544 - -1.3
4,189,558 + -1.2
4,189,558 + +0.0
4,189,558 + -0.2
4,189,558 + -1.7
4,189,558 + +0.5
4,189,559 - +0.4
4,189,559 - +0.7
4,189,565 + -0.3
4,189,565 + -0.0
4,189,601 + +1.0
4,189,616 - +0.7
4,189,737 + -0.1
4,189,762 + +0.1
4,189,762 + -1.2
4,189,762 + -0.1
4,189,763 - +0.4
4,189,793 + PP_3685 0.16 +0.5
4,189,793 + PP_3685 0.16 +1.4
4,189,808 + PP_3685 0.24 -0.0
4,189,844 - PP_3685 0.44 -0.5
4,189,844 - PP_3685 0.44 +0.9
4,189,844 - PP_3685 0.44 +1.1
4,189,844 - PP_3685 0.44 +0.7
4,189,864 + PP_3685 0.55 -0.0
4,189,871 - PP_3685 0.58 +1.5
4,189,871 - PP_3685 0.58 -0.1
4,189,944 + +0.2
4,189,944 + +0.2
4,189,944 + -0.2
4,189,944 + +0.1
4,189,944 + +0.7
4,189,944 + -0.6
4,189,959 - +0.8
4,189,959 - -0.3
4,190,145 + PP_5612 0.14 -0.4
4,190,145 + PP_5612 0.14 +0.0
4,190,146 - PP_5612 0.15 -1.4
4,190,146 - PP_5612 0.15 -0.7
4,190,308 - PP_5612 0.41 -1.3
4,190,311 + PP_5612 0.42 -0.6
4,190,312 - PP_5612 0.42 +0.5
4,190,349 - PP_5612 0.48 -0.6
4,190,403 - PP_5612 0.57 -1.2
4,190,457 + PP_5612 0.65 -0.3
4,190,500 - PP_5612 0.72 +0.3
4,190,545 - PP_5612 0.80 +0.4
4,190,691 + +0.9
4,190,736 + +0.5
4,190,737 - -0.6
4,190,737 - -0.9
4,190,737 - -0.1
4,190,820 + -1.2
4,190,821 - +0.3
4,190,826 + +0.7
4,190,826 + +0.1
4,190,827 - -0.4
4,190,827 - +0.2
4,190,942 + +0.8

Or see this region's nucleotide sequence