Strain Fitness in Pseudomonas putida KT2440 around PP_0963

Experiment: Growth at pH9 and (C) D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0961 and PP_0962 overlap by 4 nucleotidesPP_0962 and PP_0963 are separated by 117 nucleotidesPP_0963 and PP_0964 are separated by 23 nucleotides PP_0961: PP_0961 - toluene tolerance protein, at 1,101,915 to 1,102,562 _0961 PP_0962: PP_0962 - toluene-tolerance protein, at 1,102,559 to 1,102,861 _0962 PP_0963: PP_0963 - putative BolA family protein, at 1,102,979 to 1,103,218 _0963 PP_0964: PP_0964 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,103,242 to 1,104,507 _0964 Position (kb) 1102 1103 1104Strain fitness (log2 ratio) -2 -1 0 1 2at 1102.056 kb on + strand, within PP_0961at 1102.057 kb on - strand, within PP_0961at 1102.080 kb on + strand, within PP_0961at 1102.080 kb on + strand, within PP_0961at 1102.081 kb on - strand, within PP_0961at 1102.081 kb on - strand, within PP_0961at 1102.081 kb on - strand, within PP_0961at 1102.155 kb on + strand, within PP_0961at 1102.156 kb on - strand, within PP_0961at 1102.227 kb on + strand, within PP_0961at 1102.228 kb on - strand, within PP_0961at 1102.228 kb on - strand, within PP_0961at 1102.228 kb on - strand, within PP_0961at 1102.248 kb on + strand, within PP_0961at 1102.249 kb on - strand, within PP_0961at 1102.249 kb on - strand, within PP_0961at 1102.249 kb on - strand, within PP_0961at 1102.253 kb on + strand, within PP_0961at 1102.253 kb on + strand, within PP_0961at 1102.254 kb on - strand, within PP_0961at 1102.281 kb on - strand, within PP_0961at 1102.356 kb on + strand, within PP_0961at 1102.356 kb on + strand, within PP_0961at 1102.356 kb on + strand, within PP_0961at 1102.357 kb on - strand, within PP_0961at 1102.394 kb on + strand, within PP_0961at 1102.395 kb on - strand, within PP_0961at 1102.575 kb on + strandat 1102.575 kb on + strandat 1102.575 kb on + strandat 1102.575 kb on + strandat 1102.575 kb on + strandat 1102.576 kb on - strandat 1102.576 kb on - strandat 1102.623 kb on - strand, within PP_0962at 1102.741 kb on - strand, within PP_0962at 1102.751 kb on + strand, within PP_0962at 1102.751 kb on + strand, within PP_0962at 1102.810 kb on + strand, within PP_0962at 1102.810 kb on + strand, within PP_0962at 1102.832 kb on + strandat 1102.832 kb on + strandat 1102.832 kb on + strandat 1102.833 kb on - strandat 1102.833 kb on - strandat 1102.833 kb on - strandat 1102.833 kb on - strandat 1102.859 kb on + strandat 1102.859 kb on + strandat 1102.860 kb on - strandat 1102.860 kb on - strandat 1102.934 kb on + strandat 1102.989 kb on + strandat 1102.989 kb on + strandat 1102.996 kb on + strandat 1103.126 kb on + strand, within PP_0963at 1103.126 kb on + strand, within PP_0963at 1103.126 kb on + strandat 1103.126 kb on + strand, within PP_0963at 1103.126 kb on + strand, within PP_0963at 1103.172 kb on + strand, within PP_0963

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
remove
1,102,056 + PP_0961 0.22 -0.6
1,102,057 - PP_0961 0.22 -0.7
1,102,080 + PP_0961 0.25 -0.9
1,102,080 + PP_0961 0.25 +0.0
1,102,081 - PP_0961 0.26 -0.2
1,102,081 - PP_0961 0.26 -1.2
1,102,081 - PP_0961 0.26 +0.3
1,102,155 + PP_0961 0.37 -0.9
1,102,156 - PP_0961 0.37 -0.1
1,102,227 + PP_0961 0.48 -1.9
1,102,228 - PP_0961 0.48 -1.5
1,102,228 - PP_0961 0.48 -0.7
1,102,228 - PP_0961 0.48 -0.7
1,102,248 + PP_0961 0.51 -1.8
1,102,249 - PP_0961 0.52 -1.2
1,102,249 - PP_0961 0.52 -1.4
1,102,249 - PP_0961 0.52 -1.5
1,102,253 + PP_0961 0.52 +0.5
1,102,253 + PP_0961 0.52 -0.3
1,102,254 - PP_0961 0.52 -1.5
1,102,281 - PP_0961 0.56 +0.2
1,102,356 + PP_0961 0.68 +0.1
1,102,356 + PP_0961 0.68 -0.9
1,102,356 + PP_0961 0.68 +1.6
1,102,357 - PP_0961 0.68 +0.4
1,102,394 + PP_0961 0.74 +0.1
1,102,395 - PP_0961 0.74 -0.7
1,102,575 + +0.1
1,102,575 + +0.2
1,102,575 + +0.3
1,102,575 + +0.6
1,102,575 + -1.0
1,102,576 - +0.8
1,102,576 - -0.2
1,102,623 - PP_0962 0.21 -0.4
1,102,741 - PP_0962 0.60 -0.4
1,102,751 + PP_0962 0.63 -0.1
1,102,751 + PP_0962 0.63 -1.2
1,102,810 + PP_0962 0.83 -0.7
1,102,810 + PP_0962 0.83 -1.4
1,102,832 + -0.2
1,102,832 + +0.0
1,102,832 + -0.0
1,102,833 - -1.0
1,102,833 - +0.7
1,102,833 - +0.0
1,102,833 - +0.0
1,102,859 + +0.1
1,102,859 + +0.0
1,102,860 - -1.9
1,102,860 - -1.3
1,102,934 + +0.3
1,102,989 + -0.1
1,102,989 + -0.2
1,102,996 + +0.8
1,103,126 + PP_0963 0.61 -2.2
1,103,126 + PP_0963 0.61 +0.4
1,103,126 + +1.8
1,103,126 + PP_0963 0.61 +0.9
1,103,126 + PP_0963 0.61 +1.0
1,103,172 + PP_0963 0.80 +1.2

Or see this region's nucleotide sequence