Strain Fitness in Pseudomonas putida KT2440 around PP_0781

Experiment: Growth at pH9 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0779 and PP_0781 are separated by 207 nucleotidesPP_0781 and PP_0782 are separated by 472 nucleotides PP_0779: PP_0779 - Methyl-accepting chemotaxis transducer/sensory box protein, at 896,569 to 897,909 _0779 PP_0781: PP_0781 - conserved protein of unknown function, at 898,117 to 898,452 _0781 PP_0782: PP_0782 - conserved protein of unknown function, at 898,925 to 899,548 _0782 Position (kb) 898 899Strain fitness (log2 ratio) -2 -1 0 1 2at 897.144 kb on + strand, within PP_0779at 897.194 kb on - strand, within PP_0779at 897.229 kb on + strand, within PP_0779at 897.229 kb on + strand, within PP_0779at 897.230 kb on - strand, within PP_0779at 897.230 kb on - strand, within PP_0779at 897.231 kb on + strand, within PP_0779at 897.231 kb on + strand, within PP_0779at 897.231 kb on + strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.293 kb on - strand, within PP_0779at 897.325 kb on + strandat 897.325 kb on + strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strandat 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.406 kb on + strand, within PP_0779at 897.731 kb on + strand, within PP_0779at 897.731 kb on + strand, within PP_0779at 897.833 kb on + strandat 897.833 kb on + strandat 897.833 kb on + strandat 897.833 kb on + strandat 897.910 kb on + strandat 897.911 kb on - strandat 897.979 kb on - strandat 898.329 kb on - strand, within PP_0781at 898.329 kb on - strand, within PP_0781at 898.329 kb on - strand, within PP_0781at 898.483 kb on + strandat 898.901 kb on - strandat 898.935 kb on + strandat 898.935 kb on + strandat 899.165 kb on + strand, within PP_0782at 899.165 kb on + strand, within PP_0782at 899.295 kb on + strand, within PP_0782at 899.296 kb on - strand, within PP_0782at 899.299 kb on + strand, within PP_0782at 899.392 kb on + strand, within PP_0782at 899.393 kb on - strand, within PP_0782at 899.409 kb on - strand, within PP_0782

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
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897,144 + PP_0779 0.43 -0.6
897,194 - PP_0779 0.47 +0.2
897,229 + PP_0779 0.49 +0.4
897,229 + PP_0779 0.49 +0.6
897,230 - PP_0779 0.49 -0.7
897,230 - PP_0779 0.49 -0.2
897,231 + PP_0779 0.49 -0.9
897,231 + PP_0779 0.49 -0.3
897,231 + PP_0779 0.49 +0.3
897,232 - PP_0779 0.49 +1.7
897,232 - PP_0779 0.49 +0.8
897,232 - PP_0779 0.49 +0.2
897,232 - PP_0779 0.49 +0.9
897,292 + PP_0779 0.54 +0.5
897,292 + PP_0779 0.54 -0.7
897,292 + PP_0779 0.54 +0.3
897,292 + PP_0779 0.54 +0.0
897,293 - PP_0779 0.54 +0.7
897,325 + +0.3
897,325 + PP_0779 0.56 +2.2
897,326 - PP_0779 0.56 +0.6
897,326 - +0.6
897,326 - PP_0779 0.56 +0.1
897,326 - PP_0779 0.56 +1.1
897,326 - PP_0779 0.56 -0.5
897,326 - PP_0779 0.56 +0.8
897,326 - PP_0779 0.56 -0.2
897,326 - PP_0779 0.56 +0.0
897,406 + PP_0779 0.62 -0.8
897,731 + PP_0779 0.87 -0.5
897,731 + PP_0779 0.87 +0.0
897,833 + -0.0
897,833 + +0.6
897,833 + +0.7
897,833 + -0.0
897,910 + -0.6
897,911 - -1.9
897,979 - -0.1
898,329 - PP_0781 0.63 +0.5
898,329 - PP_0781 0.63 +0.4
898,329 - PP_0781 0.63 +1.0
898,483 + +0.3
898,901 - -0.4
898,935 + +0.5
898,935 + +0.3
899,165 + PP_0782 0.38 +0.4
899,165 + PP_0782 0.38 +0.4
899,295 + PP_0782 0.59 +0.0
899,296 - PP_0782 0.59 +0.6
899,299 + PP_0782 0.60 +0.2
899,392 + PP_0782 0.75 -0.2
899,393 - PP_0782 0.75 +0.2
899,409 - PP_0782 0.78 +0.5

Or see this region's nucleotide sequence