Strain Fitness in Pseudomonas putida KT2440 around PP_4364

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4363 and PP_4364 are separated by 8 nucleotidesPP_4364 and PP_4365 are separated by 176 nucleotidesPP_4365 and PP_4366 are separated by 6 nucleotides PP_4363: PP_4363 - Sensor histidine kinase/response regulator, at 4,952,740 to 4,954,431 _4363 PP_4364: PP_4364 - putative Anti-sigma F factor antagonist, at 4,954,440 to 4,954,745 _4364 PP_4365: PP_4365 - Flagellar protein FliJ, at 4,954,922 to 4,955,374 _4365 PP_4366: PP_4366 - flagellum-specific ATP synthase, at 4,955,381 to 4,956,754 _4366 Position (kb) 4954 4955Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4953.612 kb on + strand, within PP_4363at 4953.612 kb on + strand, within PP_4363at 4953.613 kb on - strand, within PP_4363at 4953.681 kb on + strand, within PP_4363at 4953.681 kb on + strand, within PP_4363at 4953.682 kb on - strand, within PP_4363at 4953.764 kb on + strand, within PP_4363at 4953.764 kb on + strandat 4953.765 kb on - strand, within PP_4363at 4954.100 kb on + strand, within PP_4363at 4954.296 kb on - strandat 4954.333 kb on + strandat 4954.333 kb on + strandat 4954.334 kb on - strandat 4954.588 kb on + strand, within PP_4364at 4954.588 kb on + strand, within PP_4364at 4954.589 kb on - strand, within PP_4364at 4954.589 kb on - strand, within PP_4364at 4954.589 kb on - strand, within PP_4364at 4954.589 kb on - strand, within PP_4364at 4954.645 kb on + strand, within PP_4364at 4954.748 kb on + strandat 4954.784 kb on + strandat 4954.893 kb on + strandat 4954.894 kb on - strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.923 kb on + strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.924 kb on - strandat 4954.925 kb on + strandat 4954.925 kb on + strandat 4954.926 kb on - strandat 4954.926 kb on - strandat 4955.022 kb on - strand, within PP_4365at 4955.022 kb on - strand, within PP_4365at 4955.022 kb on - strand, within PP_4365at 4955.052 kb on + strand, within PP_4365at 4955.052 kb on + strand, within PP_4365at 4955.053 kb on - strand, within PP_4365at 4955.069 kb on - strand, within PP_4365at 4955.220 kb on + strand, within PP_4365at 4955.379 kb on + strandat 4955.380 kb on - strandat 4955.525 kb on + strand, within PP_4366at 4955.526 kb on - strand, within PP_4366at 4955.526 kb on - strand, within PP_4366at 4955.526 kb on - strand, within PP_4366at 4955.526 kb on - strand, within PP_4366at 4955.526 kb on - strand, within PP_4366at 4955.526 kb on - strand, within PP_4366at 4955.529 kb on + strand, within PP_4366at 4955.529 kb on + strand, within PP_4366at 4955.529 kb on + strand, within PP_4366at 4955.530 kb on - strand, within PP_4366at 4955.530 kb on - strand, within PP_4366at 4955.530 kb on - strand, within PP_4366at 4955.530 kb on - strand, within PP_4366at 4955.530 kb on - strand, within PP_4366at 4955.530 kb on - strand, within PP_4366at 4955.703 kb on - strand, within PP_4366

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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4,953,612 + PP_4363 0.52 -0.4
4,953,612 + PP_4363 0.52 +1.3
4,953,613 - PP_4363 0.52 +0.3
4,953,681 + PP_4363 0.56 -2.4
4,953,681 + PP_4363 0.56 +0.7
4,953,682 - PP_4363 0.56 -0.4
4,953,764 + PP_4363 0.61 +1.0
4,953,764 + +0.7
4,953,765 - PP_4363 0.61 +0.3
4,954,100 + PP_4363 0.80 +0.2
4,954,296 - +0.1
4,954,333 + +0.2
4,954,333 + -0.2
4,954,334 - +0.8
4,954,588 + PP_4364 0.48 -2.3
4,954,588 + PP_4364 0.48 -0.4
4,954,589 - PP_4364 0.49 -3.7
4,954,589 - PP_4364 0.49 -3.3
4,954,589 - PP_4364 0.49 -2.4
4,954,589 - PP_4364 0.49 -1.7
4,954,645 + PP_4364 0.67 -3.8
4,954,748 + -1.8
4,954,784 + -2.8
4,954,893 + +0.5
4,954,894 - -0.3
4,954,923 + +0.3
4,954,923 + +0.0
4,954,923 + +1.0
4,954,923 + +0.5
4,954,923 + -0.6
4,954,923 + +0.0
4,954,923 + -1.0
4,954,923 + +0.7
4,954,923 + +0.3
4,954,923 + +0.5
4,954,923 + -3.3
4,954,923 + -1.1
4,954,923 + -1.4
4,954,924 - +0.4
4,954,924 - -1.2
4,954,924 - -0.1
4,954,924 - -0.2
4,954,924 - +0.8
4,954,924 - +0.1
4,954,924 - +0.6
4,954,924 - +0.5
4,954,924 - -0.8
4,954,924 - -0.1
4,954,924 - -0.3
4,954,924 - +0.6
4,954,924 - +0.2
4,954,924 - +0.4
4,954,925 + +0.6
4,954,925 + +0.3
4,954,926 - -0.4
4,954,926 - -0.2
4,955,022 - PP_4365 0.22 +0.7
4,955,022 - PP_4365 0.22 +0.6
4,955,022 - PP_4365 0.22 +0.1
4,955,052 + PP_4365 0.29 -1.2
4,955,052 + PP_4365 0.29 +0.1
4,955,053 - PP_4365 0.29 +0.1
4,955,069 - PP_4365 0.32 +0.6
4,955,220 + PP_4365 0.66 +1.1
4,955,379 + -0.3
4,955,380 - +0.4
4,955,525 + PP_4366 0.10 +0.3
4,955,526 - PP_4366 0.11 +0.5
4,955,526 - PP_4366 0.11 +1.3
4,955,526 - PP_4366 0.11 +1.0
4,955,526 - PP_4366 0.11 +0.8
4,955,526 - PP_4366 0.11 +0.1
4,955,526 - PP_4366 0.11 -0.1
4,955,529 + PP_4366 0.11 +0.1
4,955,529 + PP_4366 0.11 -0.0
4,955,529 + PP_4366 0.11 -0.2
4,955,530 - PP_4366 0.11 +2.7
4,955,530 - PP_4366 0.11 +0.7
4,955,530 - PP_4366 0.11 +0.8
4,955,530 - PP_4366 0.11 -0.4
4,955,530 - PP_4366 0.11 -0.6
4,955,530 - PP_4366 0.11 -2.0
4,955,703 - PP_4366 0.23 +0.8

Or see this region's nucleotide sequence