Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4708 and PP_5705 are separated by 15 nucleotides PP_5705 and PP_4709 are separated by 19 nucleotides PP_4709 and PP_4710 are separated by 93 nucleotides
PP_4708: PP_4708 - Polyribonucleotide nucleotidyltransferase, at 5,352,011 to 5,354,116
_4708
PP_5705: PP_5705 - protein of unknown function, at 5,354,132 to 5,354,347
_5705
PP_4709: PP_4709 - 30S ribosomal subunit protein S15, at 5,354,367 to 5,354,690
_4709
PP_4710: PP_4710 - tRNA pseudouridine 55 synthase, at 5,354,784 to 5,355,701
_4710
Position (kb) 5354
5355 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5354.209 kb on - strand, within PP_5705 at 5354.282 kb on - strand, within PP_5705 at 5354.282 kb on - strand, within PP_5705 at 5354.726 kb on - strand at 5354.933 kb on - strand, within PP_4710 at 5354.933 kb on - strand, within PP_4710 at 5354.933 kb on - strand, within PP_4710 at 5355.116 kb on - strand, within PP_4710 at 5355.116 kb on - strand, within PP_4710 at 5355.165 kb on - strand, within PP_4710 at 5355.167 kb on - strand, within PP_4710 at 5355.167 kb on - strand, within PP_4710 at 5355.167 kb on - strand, within PP_4710 at 5355.167 kb on - strand, within PP_4710 at 5355.167 kb on - strand, within PP_4710 at 5355.187 kb on - strand, within PP_4710 at 5355.237 kb on - strand, within PP_4710 at 5355.240 kb on - strand, within PP_4710 at 5355.240 kb on - strand, within PP_4710 at 5355.240 kb on - strand, within PP_4710 at 5355.240 kb on - strand, within PP_4710 at 5355.267 kb on + strand, within PP_4710 at 5355.267 kb on + strand, within PP_4710 at 5355.325 kb on + strand, within PP_4710 at 5355.325 kb on + strand, within PP_4710 at 5355.325 kb on + strand, within PP_4710 at 5355.325 kb on + strand, within PP_4710 at 5355.325 kb on + strand, within PP_4710 at 5355.326 kb on - strand, within PP_4710 at 5355.329 kb on + strand, within PP_4710 at 5355.329 kb on + strand, within PP_4710 at 5355.329 kb on + strand, within PP_4710 at 5355.329 kb on + strand, within PP_4710 at 5355.330 kb on - strand, within PP_4710 at 5355.337 kb on - strand, within PP_4710 at 5355.337 kb on - strand, within PP_4710
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 5,354,209 - PP_5705 0.36 +1.1 5,354,282 - PP_5705 0.69 +0.6 5,354,282 - PP_5705 0.69 -1.0 5,354,726 - -2.6 5,354,933 - PP_4710 0.16 -0.7 5,354,933 - PP_4710 0.16 -0.7 5,354,933 - PP_4710 0.16 +0.6 5,355,116 - PP_4710 0.36 +0.2 5,355,116 - PP_4710 0.36 -0.2 5,355,165 - PP_4710 0.42 -1.4 5,355,167 - PP_4710 0.42 -0.9 5,355,167 - PP_4710 0.42 -1.7 5,355,167 - PP_4710 0.42 -0.7 5,355,167 - PP_4710 0.42 -1.1 5,355,167 - PP_4710 0.42 +0.2 5,355,187 - PP_4710 0.44 +1.0 5,355,237 - PP_4710 0.49 +0.7 5,355,240 - PP_4710 0.50 -1.4 5,355,240 - PP_4710 0.50 -0.4 5,355,240 - PP_4710 0.50 -3.3 5,355,240 - PP_4710 0.50 +0.4 5,355,267 + PP_4710 0.53 -0.6 5,355,267 + PP_4710 0.53 -0.6 5,355,325 + PP_4710 0.59 +1.2 5,355,325 + PP_4710 0.59 -0.6 5,355,325 + PP_4710 0.59 +0.2 5,355,325 + PP_4710 0.59 +0.2 5,355,325 + PP_4710 0.59 -2.5 5,355,326 - PP_4710 0.59 -0.1 5,355,329 + PP_4710 0.59 +0.6 5,355,329 + PP_4710 0.59 +0.5 5,355,329 + PP_4710 0.59 -0.2 5,355,329 + PP_4710 0.59 +0.3 5,355,330 - PP_4710 0.59 -2.8 5,355,337 - PP_4710 0.60 +0.3 5,355,337 - PP_4710 0.60 +0.8
Or see this region's nucleotide sequence