Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5230 and PP_5231 overlap by 4 nucleotides PP_5231 and PP_5232 are separated by 99 nucleotides PP_5232 and PP_5233 are separated by 429 nucleotides
PP_5230: PP_5230 - Tyrosine recombinase XerC, at 5,963,911 to 5,964,810
_5230
PP_5231: PP_5231 - putative (S)-2-haloacid dehalogenase, at 5,964,807 to 5,965,502
_5231
PP_5232: PP_5232 - conserved protein of unknown function, at 5,965,602 to 5,965,931
_5232
PP_5233: PP_5233 - ammonium transporter AmtB, at 5,966,361 to 5,967,692
_5233
Position (kb) 5965
5966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5964.724 kb on + strand at 5964.725 kb on - strand at 5964.761 kb on - strand at 5965.050 kb on + strand, within PP_5231 at 5965.170 kb on + strand, within PP_5231 at 5965.170 kb on + strand, within PP_5231 at 5965.170 kb on + strand, within PP_5231 at 5965.171 kb on - strand, within PP_5231 at 5965.171 kb on - strand, within PP_5231 at 5965.171 kb on - strand, within PP_5231 at 5965.171 kb on - strand, within PP_5231 at 5965.171 kb on - strand, within PP_5231 at 5965.171 kb on - strand, within PP_5231 at 5965.171 kb on - strand, within PP_5231 at 5965.231 kb on - strand, within PP_5231 at 5965.558 kb on + strand at 5965.558 kb on + strand at 5965.558 kb on + strand at 5965.622 kb on - strand at 5965.622 kb on - strand at 5965.767 kb on + strand, within PP_5232 at 5965.767 kb on + strand, within PP_5232 at 5965.936 kb on + strand at 5965.936 kb on + strand at 5965.937 kb on - strand at 5965.937 kb on - strand at 5965.937 kb on - strand at 5965.968 kb on + strand at 5965.969 kb on - strand at 5965.969 kb on - strand at 5966.025 kb on + strand at 5966.026 kb on - strand at 5966.109 kb on - strand at 5966.130 kb on - strand at 5966.141 kb on + strand at 5966.142 kb on - strand at 5966.142 kb on - strand at 5966.198 kb on + strand at 5966.199 kb on - strand at 5966.228 kb on + strand at 5966.229 kb on - strand at 5966.229 kb on - strand at 5966.247 kb on - strand at 5966.260 kb on - strand at 5966.260 kb on - strand at 5966.280 kb on - strand at 5966.362 kb on + strand at 5966.362 kb on + strand at 5966.363 kb on - strand at 5966.363 kb on - strand at 5966.363 kb on - strand at 5966.470 kb on + strand at 5966.470 kb on + strand at 5966.470 kb on + strand at 5966.471 kb on - strand at 5966.471 kb on - strand at 5966.471 kb on - strand at 5966.583 kb on + strand, within PP_5233 at 5966.584 kb on - strand, within PP_5233 at 5966.689 kb on + strand, within PP_5233 at 5966.900 kb on + strand, within PP_5233
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 5,964,724 + -0.7 5,964,725 - -1.6 5,964,761 - -2.9 5,965,050 + PP_5231 0.35 +1.3 5,965,170 + PP_5231 0.52 +1.7 5,965,170 + PP_5231 0.52 -0.2 5,965,170 + PP_5231 0.52 -0.7 5,965,171 - PP_5231 0.52 +0.5 5,965,171 - PP_5231 0.52 +1.0 5,965,171 - PP_5231 0.52 -0.0 5,965,171 - PP_5231 0.52 -0.0 5,965,171 - PP_5231 0.52 -2.6 5,965,171 - PP_5231 0.52 +0.3 5,965,171 - PP_5231 0.52 +0.0 5,965,231 - PP_5231 0.61 +0.4 5,965,558 + -1.3 5,965,558 + +0.6 5,965,558 + -0.5 5,965,622 - +0.1 5,965,622 - +0.2 5,965,767 + PP_5232 0.50 +0.9 5,965,767 + PP_5232 0.50 +0.9 5,965,936 + +0.2 5,965,936 + +0.2 5,965,937 - +1.4 5,965,937 - -0.0 5,965,937 - +1.5 5,965,968 + +0.7 5,965,969 - -1.8 5,965,969 - +0.7 5,966,025 + -1.7 5,966,026 - -0.5 5,966,109 - -2.2 5,966,130 - +1.8 5,966,141 + -1.1 5,966,142 - +1.1 5,966,142 - +0.6 5,966,198 + +0.2 5,966,199 - -0.9 5,966,228 + +0.3 5,966,229 - +1.8 5,966,229 - -0.6 5,966,247 - -0.3 5,966,260 - +0.3 5,966,260 - +0.7 5,966,280 - +0.1 5,966,362 + +0.5 5,966,362 + +1.3 5,966,363 - -3.1 5,966,363 - +1.5 5,966,363 - +1.6 5,966,470 + -0.9 5,966,470 + -0.4 5,966,470 + +0.6 5,966,471 - -0.5 5,966,471 - -2.6 5,966,471 - -0.5 5,966,583 + PP_5233 0.17 -3.3 5,966,584 - PP_5233 0.17 +0.0 5,966,689 + PP_5233 0.25 -2.1 5,966,900 + PP_5233 0.40 -0.1
Or see this region's nucleotide sequence