Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4366 and PP_4367 overlap by 29 nucleotides PP_4367 and PP_4368 are separated by 162 nucleotides
PP_4366: PP_4366 - flagellum-specific ATP synthase, at 4,955,381 to 4,956,754
_4366
PP_4367: PP_4367 - Flagellar assembly protein FliH, at 4,956,726 to 4,957,517
_4367
PP_4368: PP_4368 - flagellar motor switch protein, at 4,957,680 to 4,958,699
_4368
Position (kb) 4956
4957
4958 Strain fitness (log2 ratio) -1
0
1
2
3 at 4955.781 kb on + strand, within PP_4366 at 4955.781 kb on + strand, within PP_4366 at 4955.782 kb on - strand, within PP_4366 at 4955.782 kb on - strand, within PP_4366 at 4955.983 kb on - strand, within PP_4366 at 4956.003 kb on + strand, within PP_4366 at 4956.003 kb on + strand, within PP_4366 at 4956.003 kb on + strand, within PP_4366 at 4956.003 kb on + strand, within PP_4366 at 4956.003 kb on + strand, within PP_4366 at 4956.003 kb on + strand, within PP_4366 at 4956.004 kb on - strand, within PP_4366 at 4956.004 kb on - strand, within PP_4366 at 4956.004 kb on - strand, within PP_4366 at 4956.197 kb on - strand, within PP_4366 at 4956.248 kb on - strand, within PP_4366 at 4956.263 kb on - strand, within PP_4366 at 4956.279 kb on + strand, within PP_4366 at 4956.296 kb on - strand, within PP_4366 at 4956.485 kb on - strand, within PP_4366 at 4956.485 kb on - strand, within PP_4366 at 4956.559 kb on - strand, within PP_4366 at 4956.637 kb on + strand at 4956.638 kb on - strand at 4956.638 kb on - strand at 4956.693 kb on + strand at 4956.693 kb on + strand at 4956.694 kb on - strand at 4957.086 kb on + strand, within PP_4367 at 4957.087 kb on - strand, within PP_4367 at 4957.303 kb on + strand, within PP_4367 at 4957.304 kb on - strand, within PP_4367 at 4957.304 kb on - strand, within PP_4367 at 4957.304 kb on - strand, within PP_4367 at 4957.304 kb on - strand, within PP_4367 at 4957.561 kb on + strand at 4957.561 kb on + strand at 4957.562 kb on - strand at 4957.562 kb on - strand at 4957.562 kb on - strand at 4957.562 kb on - strand at 4957.562 kb on - strand at 4957.643 kb on + strand at 4957.677 kb on - strand at 4957.677 kb on - strand at 4957.677 kb on - strand at 4957.681 kb on + strand at 4957.681 kb on + strand at 4957.681 kb on + strand at 4957.681 kb on + strand at 4957.681 kb on + strand at 4957.681 kb on + strand at 4957.681 kb on + strand at 4957.682 kb on - strand at 4957.682 kb on - strand at 4957.682 kb on - strand at 4957.682 kb on - strand at 4957.682 kb on - strand at 4957.682 kb on - strand at 4957.682 kb on - strand at 4957.682 kb on - strand at 4958.094 kb on - strand, within PP_4368 at 4958.094 kb on - strand, within PP_4368 at 4958.275 kb on + strand, within PP_4368 at 4958.275 kb on + strand, within PP_4368 at 4958.311 kb on + strand, within PP_4368 at 4958.372 kb on + strand, within PP_4368 at 4958.452 kb on + strand, within PP_4368 at 4958.452 kb on + strand, within PP_4368 at 4958.452 kb on + strand, within PP_4368 at 4958.453 kb on - strand, within PP_4368 at 4958.453 kb on - strand, within PP_4368 at 4958.453 kb on - strand, within PP_4368 at 4958.453 kb on - strand, within PP_4368
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 4,955,781 + PP_4366 0.29 +0.1 4,955,781 + PP_4366 0.29 +1.6 4,955,782 - PP_4366 0.29 +1.4 4,955,782 - PP_4366 0.29 +0.7 4,955,983 - PP_4366 0.44 -0.3 4,956,003 + PP_4366 0.45 +0.8 4,956,003 + PP_4366 0.45 +1.0 4,956,003 + PP_4366 0.45 -0.1 4,956,003 + PP_4366 0.45 +0.5 4,956,003 + PP_4366 0.45 +0.2 4,956,003 + PP_4366 0.45 +1.3 4,956,004 - PP_4366 0.45 +0.4 4,956,004 - PP_4366 0.45 +0.7 4,956,004 - PP_4366 0.45 +0.4 4,956,197 - PP_4366 0.59 +0.9 4,956,248 - PP_4366 0.63 +1.3 4,956,263 - PP_4366 0.64 +0.4 4,956,279 + PP_4366 0.65 +0.0 4,956,296 - PP_4366 0.67 +0.4 4,956,485 - PP_4366 0.80 +1.2 4,956,485 - PP_4366 0.80 +0.2 4,956,559 - PP_4366 0.86 +0.7 4,956,637 + +0.4 4,956,638 - -0.2 4,956,638 - +0.4 4,956,693 + +0.8 4,956,693 + -0.3 4,956,694 - +0.5 4,957,086 + PP_4367 0.45 +0.4 4,957,087 - PP_4367 0.46 +0.9 4,957,303 + PP_4367 0.73 +2.9 4,957,304 - PP_4367 0.73 +1.0 4,957,304 - PP_4367 0.73 +1.9 4,957,304 - PP_4367 0.73 +0.9 4,957,304 - PP_4367 0.73 +0.5 4,957,561 + +0.9 4,957,561 + +0.8 4,957,562 - +2.7 4,957,562 - +0.0 4,957,562 - +0.4 4,957,562 - -0.1 4,957,562 - -0.4 4,957,643 + +1.5 4,957,677 - -0.4 4,957,677 - -0.9 4,957,677 - -1.6 4,957,681 + +0.9 4,957,681 + +1.7 4,957,681 + +0.4 4,957,681 + +1.3 4,957,681 + +1.6 4,957,681 + -0.0 4,957,681 + +0.8 4,957,682 - +1.1 4,957,682 - -0.1 4,957,682 - +0.2 4,957,682 - +0.9 4,957,682 - +1.5 4,957,682 - +0.7 4,957,682 - +0.6 4,957,682 - -0.4 4,958,094 - PP_4368 0.41 +0.1 4,958,094 - PP_4368 0.41 +0.6 4,958,275 + PP_4368 0.58 +0.4 4,958,275 + PP_4368 0.58 +0.5 4,958,311 + PP_4368 0.62 +0.7 4,958,372 + PP_4368 0.68 +0.6 4,958,452 + PP_4368 0.76 +0.7 4,958,452 + PP_4368 0.76 +2.0 4,958,452 + PP_4368 0.76 +1.4 4,958,453 - PP_4368 0.76 +0.8 4,958,453 - PP_4368 0.76 -0.1 4,958,453 - PP_4368 0.76 +0.6 4,958,453 - PP_4368 0.76 +1.5
Or see this region's nucleotide sequence