Strain Fitness in Pseudomonas putida KT2440 around PP_4344

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4343 and PP_4344 are separated by 11 nucleotidesPP_4344 and PP_4345 are separated by 417 nucleotides PP_4343: PP_4343 - Flagellar biosynthesis protein FlhF, at 4,933,141 to 4,934,448 _4343 PP_4344: PP_4344 - flagellar export pore protein, at 4,934,460 to 4,936,589 _4344 PP_4345: PP_4345 - Transcriptional regulator, GntR family, at 4,937,007 to 4,937,699 _4345 Position (kb) 4934 4935 4936 4937Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4933.463 kb on + strand, within PP_4343at 4933.464 kb on - strand, within PP_4343at 4933.545 kb on + strand, within PP_4343at 4933.546 kb on - strand, within PP_4343at 4933.731 kb on - strand, within PP_4343at 4934.312 kb on + strand, within PP_4343at 4934.313 kb on - strand, within PP_4343at 4934.439 kb on + strandat 4934.440 kb on - strandat 4934.512 kb on - strandat 4934.675 kb on + strand, within PP_4344at 4934.675 kb on + strand, within PP_4344at 4934.675 kb on + strand, within PP_4344at 4934.675 kb on + strand, within PP_4344at 4934.675 kb on + strand, within PP_4344at 4934.676 kb on - strand, within PP_4344at 4934.676 kb on - strand, within PP_4344at 4934.676 kb on - strand, within PP_4344at 4934.676 kb on - strand, within PP_4344at 4934.727 kb on - strand, within PP_4344at 4934.763 kb on - strand, within PP_4344at 4934.772 kb on + strand, within PP_4344at 4935.000 kb on - strand, within PP_4344at 4935.209 kb on + strand, within PP_4344at 4935.265 kb on + strand, within PP_4344at 4935.265 kb on + strand, within PP_4344at 4935.616 kb on + strand, within PP_4344at 4935.616 kb on + strand, within PP_4344at 4935.865 kb on + strand, within PP_4344at 4935.865 kb on + strand, within PP_4344at 4935.865 kb on + strand, within PP_4344at 4935.866 kb on - strand, within PP_4344at 4935.866 kb on - strand, within PP_4344at 4935.893 kb on + strand, within PP_4344at 4935.893 kb on + strand, within PP_4344at 4935.893 kb on + strand, within PP_4344at 4935.893 kb on + strand, within PP_4344at 4935.893 kb on + strand, within PP_4344at 4935.893 kb on + strand, within PP_4344at 4935.894 kb on - strand, within PP_4344at 4935.894 kb on - strand, within PP_4344at 4935.894 kb on - strand, within PP_4344at 4935.894 kb on - strand, within PP_4344at 4935.894 kb on - strand, within PP_4344at 4936.007 kb on - strand, within PP_4344at 4936.007 kb on - strand, within PP_4344at 4936.149 kb on - strand, within PP_4344at 4936.149 kb on - strand, within PP_4344at 4936.222 kb on + strand, within PP_4344at 4936.222 kb on + strand, within PP_4344at 4936.222 kb on + strand, within PP_4344at 4936.222 kb on + strand, within PP_4344at 4936.223 kb on - strand, within PP_4344at 4936.223 kb on - strand, within PP_4344at 4936.223 kb on - strand, within PP_4344at 4936.223 kb on - strand, within PP_4344at 4936.226 kb on + strand, within PP_4344at 4936.227 kb on - strand, within PP_4344at 4936.400 kb on - strandat 4936.402 kb on - strandat 4936.794 kb on + strandat 4936.794 kb on + strandat 4936.794 kb on + strandat 4936.795 kb on - strandat 4936.795 kb on - strandat 4936.877 kb on + strandat 4936.877 kb on + strandat 4936.878 kb on - strandat 4936.887 kb on + strandat 4936.888 kb on - strandat 4936.940 kb on + strandat 4936.947 kb on - strandat 4936.947 kb on - strandat 4936.982 kb on + strandat 4937.024 kb on + strandat 4937.030 kb on + strandat 4937.031 kb on - strandat 4937.054 kb on + strandat 4937.070 kb on + strandat 4937.070 kb on + strandat 4937.099 kb on - strand, within PP_4345at 4937.220 kb on - strand, within PP_4345at 4937.223 kb on + strand, within PP_4345at 4937.223 kb on + strand, within PP_4345at 4937.234 kb on + strand, within PP_4345at 4937.235 kb on - strand, within PP_4345at 4937.283 kb on + strand, within PP_4345at 4937.283 kb on + strand, within PP_4345at 4937.283 kb on + strand, within PP_4345at 4937.283 kb on + strand, within PP_4345at 4937.283 kb on + strand, within PP_4345at 4937.284 kb on - strand, within PP_4345at 4937.374 kb on + strand, within PP_4345at 4937.374 kb on + strand, within PP_4345at 4937.378 kb on + strand, within PP_4345at 4937.484 kb on - strand, within PP_4345at 4937.567 kb on + strand, within PP_4345

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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4,933,463 + PP_4343 0.25 -0.2
4,933,464 - PP_4343 0.25 +0.6
4,933,545 + PP_4343 0.31 -1.2
4,933,546 - PP_4343 0.31 +0.6
4,933,731 - PP_4343 0.45 +1.1
4,934,312 + PP_4343 0.90 -2.0
4,934,313 - PP_4343 0.90 -0.4
4,934,439 + +3.7
4,934,440 - +2.4
4,934,512 - -0.2
4,934,675 + PP_4344 0.10 +1.4
4,934,675 + PP_4344 0.10 +0.7
4,934,675 + PP_4344 0.10 +1.6
4,934,675 + PP_4344 0.10 -2.3
4,934,675 + PP_4344 0.10 +2.2
4,934,676 - PP_4344 0.10 -0.2
4,934,676 - PP_4344 0.10 +0.4
4,934,676 - PP_4344 0.10 +0.6
4,934,676 - PP_4344 0.10 -0.9
4,934,727 - PP_4344 0.13 +1.4
4,934,763 - PP_4344 0.14 +0.2
4,934,772 + PP_4344 0.15 +1.9
4,935,000 - PP_4344 0.25 +0.1
4,935,209 + PP_4344 0.35 +0.3
4,935,265 + PP_4344 0.38 +0.6
4,935,265 + PP_4344 0.38 +0.5
4,935,616 + PP_4344 0.54 +1.0
4,935,616 + PP_4344 0.54 +1.4
4,935,865 + PP_4344 0.66 +1.6
4,935,865 + PP_4344 0.66 +0.6
4,935,865 + PP_4344 0.66 -0.3
4,935,866 - PP_4344 0.66 +0.2
4,935,866 - PP_4344 0.66 +1.0
4,935,893 + PP_4344 0.67 +0.4
4,935,893 + PP_4344 0.67 +0.8
4,935,893 + PP_4344 0.67 -2.1
4,935,893 + PP_4344 0.67 -1.1
4,935,893 + PP_4344 0.67 +0.8
4,935,893 + PP_4344 0.67 -0.3
4,935,894 - PP_4344 0.67 +1.1
4,935,894 - PP_4344 0.67 +1.0
4,935,894 - PP_4344 0.67 +0.1
4,935,894 - PP_4344 0.67 -0.1
4,935,894 - PP_4344 0.67 -0.6
4,936,007 - PP_4344 0.73 +1.6
4,936,007 - PP_4344 0.73 +0.2
4,936,149 - PP_4344 0.79 +0.8
4,936,149 - PP_4344 0.79 -0.4
4,936,222 + PP_4344 0.83 +0.4
4,936,222 + PP_4344 0.83 +0.5
4,936,222 + PP_4344 0.83 +0.3
4,936,222 + PP_4344 0.83 +0.0
4,936,223 - PP_4344 0.83 +2.3
4,936,223 - PP_4344 0.83 +0.1
4,936,223 - PP_4344 0.83 +1.6
4,936,223 - PP_4344 0.83 +0.7
4,936,226 + PP_4344 0.83 +1.1
4,936,227 - PP_4344 0.83 +2.8
4,936,400 - +1.3
4,936,402 - +0.8
4,936,794 + +0.8
4,936,794 + -0.3
4,936,794 + +1.3
4,936,795 - +0.4
4,936,795 - +1.2
4,936,877 + -0.6
4,936,877 + +0.1
4,936,878 - +0.5
4,936,887 + +0.9
4,936,888 - +0.2
4,936,940 + -0.3
4,936,947 - -0.6
4,936,947 - +0.9
4,936,982 + +1.7
4,937,024 + -1.1
4,937,030 + -3.5
4,937,031 - -0.3
4,937,054 + -1.5
4,937,070 + +1.3
4,937,070 + -0.6
4,937,099 - PP_4345 0.13 -2.4
4,937,220 - PP_4345 0.31 -1.7
4,937,223 + PP_4345 0.31 +0.7
4,937,223 + PP_4345 0.31 -1.8
4,937,234 + PP_4345 0.33 -0.5
4,937,235 - PP_4345 0.33 -0.0
4,937,283 + PP_4345 0.40 +0.5
4,937,283 + PP_4345 0.40 +1.3
4,937,283 + PP_4345 0.40 +0.1
4,937,283 + PP_4345 0.40 +0.7
4,937,283 + PP_4345 0.40 -1.3
4,937,284 - PP_4345 0.40 +0.7
4,937,374 + PP_4345 0.53 +0.5
4,937,374 + PP_4345 0.53 -1.1
4,937,378 + PP_4345 0.54 -0.4
4,937,484 - PP_4345 0.69 -2.9
4,937,567 + PP_4345 0.81 -0.2

Or see this region's nucleotide sequence