Strain Fitness in Pseudomonas putida KT2440 around PP_4006

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4005 and PP_4006 are separated by 56 nucleotidesPP_4006 and PP_4007 are separated by 101 nucleotidesPP_4007 and PP_4008 are separated by 85 nucleotides PP_4005: PP_4005 - Leucyl/phenylalanyl-tRNA--protein transferase, at 4,515,399 to 4,516,079 _4005 PP_4006: PP_4006 - Putative arginyl-tRNA--protein transferase, at 4,516,136 to 4,516,843 _4006 PP_4007: PP_4007 - Translation initiation factor IF-1, at 4,516,945 to 4,517,163 _4007 PP_4008: PP_4008 - ATP-dependent serine protease, at 4,517,249 to 4,519,519 _4008 Position (kb) 4516 4517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4515.175 kb on + strandat 4515.286 kb on + strandat 4515.393 kb on + strandat 4515.543 kb on + strand, within PP_4005at 4515.544 kb on - strand, within PP_4005at 4515.759 kb on + strand, within PP_4005at 4515.834 kb on + strand, within PP_4005at 4515.834 kb on + strand, within PP_4005at 4516.029 kb on + strandat 4516.092 kb on - strandat 4516.092 kb on - strandat 4516.100 kb on + strandat 4516.100 kb on + strandat 4516.101 kb on - strandat 4516.101 kb on - strandat 4516.163 kb on + strandat 4516.164 kb on - strandat 4516.164 kb on - strandat 4516.164 kb on - strandat 4516.256 kb on + strand, within PP_4006at 4516.392 kb on + strand, within PP_4006at 4516.403 kb on - strand, within PP_4006at 4516.403 kb on - strand, within PP_4006at 4516.451 kb on + strand, within PP_4006at 4516.451 kb on + strand, within PP_4006at 4516.452 kb on - strand, within PP_4006at 4516.473 kb on - strand, within PP_4006at 4516.473 kb on - strand, within PP_4006at 4516.473 kb on - strand, within PP_4006at 4516.475 kb on - strand, within PP_4006at 4516.475 kb on - strand, within PP_4006at 4516.505 kb on + strand, within PP_4006at 4516.505 kb on + strand, within PP_4006at 4516.505 kb on + strand, within PP_4006at 4516.505 kb on + strand, within PP_4006at 4516.505 kb on + strand, within PP_4006at 4516.506 kb on - strand, within PP_4006at 4516.506 kb on - strand, within PP_4006at 4516.506 kb on - strand, within PP_4006at 4516.506 kb on - strand, within PP_4006at 4516.542 kb on + strand, within PP_4006at 4516.568 kb on + strand, within PP_4006at 4516.643 kb on + strand, within PP_4006at 4516.643 kb on + strand, within PP_4006at 4516.644 kb on - strand, within PP_4006at 4516.652 kb on + strand, within PP_4006at 4516.652 kb on + strand, within PP_4006at 4516.781 kb on + strandat 4516.781 kb on + strandat 4516.781 kb on + strandat 4516.782 kb on - strandat 4516.782 kb on - strandat 4516.782 kb on - strandat 4516.782 kb on - strandat 4516.815 kb on + strandat 4516.875 kb on + strandat 4517.425 kb on - strandat 4517.650 kb on + strand, within PP_4008at 4517.650 kb on + strand, within PP_4008at 4517.651 kb on - strand, within PP_4008at 4517.716 kb on + strand, within PP_4008at 4517.828 kb on + strand, within PP_4008at 4517.829 kb on - strand, within PP_4008at 4517.829 kb on - strand, within PP_4008at 4517.829 kb on - strand, within PP_4008

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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4,515,175 + -3.4
4,515,286 + +0.8
4,515,393 + +1.3
4,515,543 + PP_4005 0.21 +1.5
4,515,544 - PP_4005 0.21 -1.7
4,515,759 + PP_4005 0.53 -2.0
4,515,834 + PP_4005 0.64 +1.3
4,515,834 + PP_4005 0.64 +0.9
4,516,029 + +2.0
4,516,092 - +0.4
4,516,092 - -0.5
4,516,100 + -0.1
4,516,100 + +0.5
4,516,101 - -0.7
4,516,101 - -0.7
4,516,163 + +1.4
4,516,164 - +0.1
4,516,164 - -0.7
4,516,164 - -0.5
4,516,256 + PP_4006 0.17 +0.2
4,516,392 + PP_4006 0.36 +1.8
4,516,403 - PP_4006 0.38 -0.3
4,516,403 - PP_4006 0.38 +1.3
4,516,451 + PP_4006 0.44 +0.3
4,516,451 + PP_4006 0.44 -1.3
4,516,452 - PP_4006 0.45 +0.6
4,516,473 - PP_4006 0.48 +0.5
4,516,473 - PP_4006 0.48 +0.3
4,516,473 - PP_4006 0.48 +0.3
4,516,475 - PP_4006 0.48 -0.1
4,516,475 - PP_4006 0.48 +1.4
4,516,505 + PP_4006 0.52 +1.8
4,516,505 + PP_4006 0.52 -0.9
4,516,505 + PP_4006 0.52 +1.3
4,516,505 + PP_4006 0.52 -0.1
4,516,505 + PP_4006 0.52 +1.0
4,516,506 - PP_4006 0.52 +0.9
4,516,506 - PP_4006 0.52 +0.6
4,516,506 - PP_4006 0.52 +0.4
4,516,506 - PP_4006 0.52 +0.3
4,516,542 + PP_4006 0.57 +1.2
4,516,568 + PP_4006 0.61 +0.7
4,516,643 + PP_4006 0.72 +1.0
4,516,643 + PP_4006 0.72 +1.0
4,516,644 - PP_4006 0.72 +0.8
4,516,652 + PP_4006 0.73 +0.3
4,516,652 + PP_4006 0.73 -0.7
4,516,781 + -1.6
4,516,781 + +0.6
4,516,781 + +1.1
4,516,782 - +1.0
4,516,782 - +0.8
4,516,782 - +0.3
4,516,782 - -2.5
4,516,815 + -0.6
4,516,875 + -1.3
4,517,425 - -0.2
4,517,650 + PP_4008 0.18 -0.5
4,517,650 + PP_4008 0.18 +1.4
4,517,651 - PP_4008 0.18 -0.7
4,517,716 + PP_4008 0.21 -0.5
4,517,828 + PP_4008 0.25 +1.6
4,517,829 - PP_4008 0.26 +1.6
4,517,829 - PP_4008 0.26 -2.1
4,517,829 - PP_4008 0.26 +1.0

Or see this region's nucleotide sequence