Strain Fitness in Pseudomonas putida KT2440 around PP_0700

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0699 and PP_t70 are separated by 130 nucleotidesPP_t70 and PP_0700 are separated by 95 nucleotidesPP_0700 and PP_0701 are separated by 130 nucleotides PP_0699: PP_0699 - Transporter, LysE family, at 812,479 to 813,093 _0699 PP_t70: PP_t70 - tRNA-Met, at 813,224 to 813,300 _t70 PP_0700: PP_0700 - putative Transmembrane sensor, at 813,396 to 814,382 _0700 PP_0701: PP_0701 - fosmidomycin efflux system, at 814,513 to 815,727 _0701 Position (kb) 813 814 815Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 812.401 kb on - strandat 812.422 kb on + strandat 812.638 kb on + strand, within PP_0699at 812.638 kb on + strand, within PP_0699at 812.638 kb on + strand, within PP_0699at 812.638 kb on + strand, within PP_0699at 812.639 kb on - strandat 812.639 kb on - strand, within PP_0699at 812.734 kb on + strand, within PP_0699at 812.735 kb on - strand, within PP_0699at 812.735 kb on - strand, within PP_0699at 812.760 kb on + strand, within PP_0699at 812.760 kb on + strand, within PP_0699at 812.798 kb on + strand, within PP_0699at 812.986 kb on - strand, within PP_0699at 813.086 kb on + strandat 813.086 kb on + strandat 813.086 kb on + strandat 813.086 kb on + strandat 813.087 kb on - strandat 813.103 kb on - strandat 813.504 kb on + strand, within PP_0700at 813.505 kb on - strand, within PP_0700at 813.650 kb on + strand, within PP_0700at 813.651 kb on - strand, within PP_0700at 813.651 kb on - strand, within PP_0700at 813.783 kb on + strand, within PP_0700at 813.784 kb on - strand, within PP_0700at 813.802 kb on + strand, within PP_0700at 813.803 kb on - strand, within PP_0700at 813.803 kb on - strand, within PP_0700at 813.804 kb on + strand, within PP_0700at 813.805 kb on - strand, within PP_0700at 813.805 kb on - strand, within PP_0700at 813.972 kb on + strand, within PP_0700at 813.972 kb on + strand, within PP_0700at 813.972 kb on + strand, within PP_0700at 813.973 kb on - strand, within PP_0700at 814.037 kb on - strand, within PP_0700at 814.037 kb on - strand, within PP_0700at 814.042 kb on + strand, within PP_0700at 814.043 kb on - strand, within PP_0700at 814.043 kb on - strand, within PP_0700at 814.180 kb on + strand, within PP_0700at 814.200 kb on + strand, within PP_0700at 814.200 kb on + strand, within PP_0700at 814.201 kb on - strand, within PP_0700at 814.201 kb on - strand, within PP_0700at 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.457 kb on + strandat 814.457 kb on + strandat 814.458 kb on - strandat 814.458 kb on - strandat 814.458 kb on - strandat 814.461 kb on + strandat 814.462 kb on - strandat 814.524 kb on + strandat 814.584 kb on + strandat 814.584 kb on + strandat 814.584 kb on + strandat 814.584 kb on + strandat 814.585 kb on - strandat 814.672 kb on + strand, within PP_0701at 814.672 kb on + strand, within PP_0701at 814.673 kb on - strand, within PP_0701at 814.806 kb on + strand, within PP_0701at 814.806 kb on + strand, within PP_0701at 814.807 kb on - strand, within PP_0701at 814.807 kb on - strand, within PP_0701at 814.807 kb on - strand, within PP_0701at 814.807 kb on - strand, within PP_0701at 814.917 kb on + strand, within PP_0701at 815.027 kb on + strand, within PP_0701at 815.111 kb on - strand, within PP_0701at 815.227 kb on + strand, within PP_0701at 815.227 kb on + strandat 815.227 kb on + strand, within PP_0701at 815.227 kb on + strand, within PP_0701at 815.227 kb on + strandat 815.228 kb on - strand, within PP_0701at 815.228 kb on - strand, within PP_0701at 815.228 kb on - strand, within PP_0701at 815.228 kb on - strand, within PP_0701at 815.233 kb on + strand, within PP_0701at 815.233 kb on + strand, within PP_0701at 815.233 kb on + strand, within PP_0701at 815.234 kb on - strand, within PP_0701at 815.234 kb on - strand, within PP_0701at 815.255 kb on - strand, within PP_0701at 815.259 kb on + strand, within PP_0701at 815.259 kb on + strand, within PP_0701at 815.260 kb on - strand, within PP_0701at 815.266 kb on + strand, within PP_0701at 815.267 kb on - strand, within PP_0701

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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812,401 - -1.3
812,422 + -1.1
812,638 + PP_0699 0.26 -3.5
812,638 + PP_0699 0.26 -0.3
812,638 + PP_0699 0.26 +0.4
812,638 + PP_0699 0.26 -1.1
812,639 - -1.2
812,639 - PP_0699 0.26 -0.7
812,734 + PP_0699 0.41 -1.4
812,735 - PP_0699 0.42 -3.0
812,735 - PP_0699 0.42 -1.6
812,760 + PP_0699 0.46 +0.9
812,760 + PP_0699 0.46 -0.1
812,798 + PP_0699 0.52 -0.9
812,986 - PP_0699 0.82 -0.2
813,086 + +0.0
813,086 + +0.3
813,086 + +0.1
813,086 + +0.1
813,087 - +0.6
813,103 - -1.1
813,504 + PP_0700 0.11 +1.2
813,505 - PP_0700 0.11 +1.2
813,650 + PP_0700 0.26 -0.8
813,651 - PP_0700 0.26 -0.1
813,651 - PP_0700 0.26 -2.0
813,783 + PP_0700 0.39 -0.5
813,784 - PP_0700 0.39 -0.3
813,802 + PP_0700 0.41 +0.0
813,803 - PP_0700 0.41 -0.3
813,803 - PP_0700 0.41 -1.9
813,804 + PP_0700 0.41 +1.0
813,805 - PP_0700 0.41 -3.2
813,805 - PP_0700 0.41 +0.3
813,972 + PP_0700 0.58 -0.3
813,972 + PP_0700 0.58 -0.1
813,972 + PP_0700 0.58 -0.5
813,973 - PP_0700 0.58 -0.9
814,037 - PP_0700 0.65 -0.6
814,037 - PP_0700 0.65 +0.8
814,042 + PP_0700 0.65 -0.1
814,043 - PP_0700 0.66 -0.4
814,043 - PP_0700 0.66 +1.3
814,180 + PP_0700 0.79 +0.9
814,200 + PP_0700 0.81 +0.5
814,200 + PP_0700 0.81 -0.7
814,201 - PP_0700 0.82 -0.5
814,201 - PP_0700 0.82 -0.1
814,453 + +0.8
814,453 + +0.1
814,453 + +0.4
814,453 + +1.9
814,453 + -0.1
814,453 + -0.5
814,453 + -1.2
814,453 + +0.2
814,453 + +1.3
814,453 + +0.4
814,453 + -0.8
814,453 + +0.9
814,453 + +0.5
814,454 - +0.8
814,454 - +1.0
814,454 - -0.3
814,454 - -0.5
814,454 - -1.1
814,454 - +0.6
814,454 - +0.2
814,454 - -0.6
814,454 - +0.2
814,457 + -3.1
814,457 + -0.3
814,458 - +0.2
814,458 - -0.5
814,458 - +0.9
814,461 + -1.0
814,462 - -0.7
814,524 + -0.9
814,584 + -0.1
814,584 + -0.8
814,584 + -3.1
814,584 + +0.8
814,585 - +0.3
814,672 + PP_0701 0.13 -1.1
814,672 + PP_0701 0.13 -2.3
814,673 - PP_0701 0.13 +0.3
814,806 + PP_0701 0.24 -0.7
814,806 + PP_0701 0.24 +0.1
814,807 - PP_0701 0.24 +0.5
814,807 - PP_0701 0.24 -1.1
814,807 - PP_0701 0.24 +0.4
814,807 - PP_0701 0.24 +0.8
814,917 + PP_0701 0.33 +0.4
815,027 + PP_0701 0.42 +0.2
815,111 - PP_0701 0.49 -0.2
815,227 + PP_0701 0.59 -0.7
815,227 + -0.7
815,227 + PP_0701 0.59 -0.8
815,227 + PP_0701 0.59 -1.1
815,227 + +2.1
815,228 - PP_0701 0.59 -0.2
815,228 - PP_0701 0.59 -0.9
815,228 - PP_0701 0.59 +0.1
815,228 - PP_0701 0.59 +0.6
815,233 + PP_0701 0.59 +0.3
815,233 + PP_0701 0.59 +0.6
815,233 + PP_0701 0.59 -1.7
815,234 - PP_0701 0.59 -0.1
815,234 - PP_0701 0.59 -1.5
815,255 - PP_0701 0.61 -0.6
815,259 + PP_0701 0.61 -0.5
815,259 + PP_0701 0.61 -0.6
815,260 - PP_0701 0.61 +0.0
815,266 + PP_0701 0.62 -0.0
815,267 - PP_0701 0.62 -0.1

Or see this region's nucleotide sequence