Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5707 and PP_5708 are separated by 63 nucleotides PP_5708 and PP_5709 are separated by 17 nucleotides PP_5709 and PP_5710 are separated by 195 nucleotides PP_5710 and PP_4740 are separated by 386 nucleotides
PP_5707: PP_5707 - conserved protein of unknown function, at 5,391,084 to 5,391,347
_5707
PP_5708: PP_5708 - protein of unknown function, at 5,391,411 to 5,391,608
_5708
PP_5709: PP_5709 - protein of unknown function, at 5,391,626 to 5,391,895
_5709
PP_5710: PP_5710 - exported protein of unknown function, at 5,392,091 to 5,392,672
_5710
PP_4740: PP_4740 - Type I restriction enzyme EcoAI R protein, at 5,393,059 to 5,395,422
_4740
Position (kb) 5392
5393 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5391.222 kb on + strand, within PP_5707 at 5391.288 kb on + strand, within PP_5707 at 5391.288 kb on + strand, within PP_5707 at 5391.289 kb on - strand, within PP_5707 at 5391.289 kb on - strand, within PP_5707 at 5391.289 kb on - strand, within PP_5707 at 5391.289 kb on - strand, within PP_5707 at 5391.366 kb on + strand at 5391.366 kb on + strand at 5391.366 kb on + strand at 5391.366 kb on + strand at 5391.367 kb on - strand at 5391.453 kb on + strand, within PP_5708 at 5391.453 kb on + strand, within PP_5708 at 5391.453 kb on + strand, within PP_5708 at 5391.454 kb on - strand, within PP_5708 at 5391.506 kb on + strand, within PP_5708 at 5391.506 kb on + strand, within PP_5708 at 5391.506 kb on + strand, within PP_5708 at 5391.507 kb on - strand, within PP_5708 at 5391.507 kb on - strand, within PP_5708 at 5391.507 kb on - strand, within PP_5708 at 5391.550 kb on + strand, within PP_5708 at 5391.550 kb on + strand, within PP_5708 at 5391.566 kb on + strand, within PP_5708 at 5391.567 kb on - strand at 5391.595 kb on + strand at 5391.595 kb on + strand at 5391.595 kb on + strand at 5391.596 kb on - strand at 5391.596 kb on - strand at 5391.596 kb on - strand at 5391.598 kb on + strand at 5391.599 kb on - strand at 5391.599 kb on - strand at 5391.672 kb on + strand, within PP_5709 at 5391.673 kb on - strand, within PP_5709 at 5391.673 kb on - strand, within PP_5709 at 5391.723 kb on + strand, within PP_5709 at 5391.724 kb on - strand, within PP_5709 at 5391.724 kb on - strand, within PP_5709 at 5391.724 kb on - strand, within PP_5709 at 5391.724 kb on - strand, within PP_5709 at 5391.728 kb on + strand, within PP_5709 at 5391.729 kb on - strand, within PP_5709 at 5391.729 kb on - strand, within PP_5709 at 5391.729 kb on - strand, within PP_5709 at 5391.751 kb on + strand, within PP_5709 at 5391.752 kb on - strand, within PP_5709 at 5391.796 kb on - strand, within PP_5709 at 5391.796 kb on - strand, within PP_5709 at 5391.895 kb on + strand at 5391.916 kb on + strand at 5391.963 kb on + strand at 5392.085 kb on + strand at 5392.120 kb on - strand at 5392.135 kb on + strand at 5392.151 kb on + strand, within PP_5710 at 5392.154 kb on + strand, within PP_5710 at 5392.156 kb on + strand, within PP_5710 at 5392.157 kb on - strand, within PP_5710 at 5392.157 kb on - strand, within PP_5710 at 5392.234 kb on + strand, within PP_5710 at 5392.238 kb on + strand, within PP_5710 at 5392.238 kb on + strand, within PP_5710 at 5392.239 kb on - strand, within PP_5710 at 5392.239 kb on - strand, within PP_5710 at 5392.310 kb on + strand, within PP_5710 at 5392.311 kb on - strand, within PP_5710 at 5392.311 kb on - strand, within PP_5710 at 5392.311 kb on - strand, within PP_5710 at 5392.317 kb on - strand, within PP_5710 at 5392.322 kb on + strand, within PP_5710 at 5392.322 kb on + strand, within PP_5710 at 5392.323 kb on - strand, within PP_5710 at 5392.361 kb on - strand, within PP_5710 at 5392.368 kb on - strand, within PP_5710 at 5392.368 kb on - strand, within PP_5710 at 5392.488 kb on - strand, within PP_5710 at 5392.545 kb on - strand, within PP_5710 at 5392.576 kb on + strand, within PP_5710 at 5392.577 kb on - strand, within PP_5710 at 5392.605 kb on - strand, within PP_5710 at 5392.660 kb on + strand at 5392.661 kb on - strand at 5392.666 kb on + strand at 5392.667 kb on - strand at 5392.667 kb on - strand at 5392.667 kb on - strand at 5392.721 kb on + strand at 5392.732 kb on + strand at 5392.732 kb on + strand at 5392.733 kb on - strand at 5392.792 kb on + strand at 5392.795 kb on + strand at 5392.795 kb on + strand at 5392.796 kb on - strand at 5392.796 kb on - strand at 5392.796 kb on - strand at 5392.809 kb on + strand at 5392.809 kb on + strand at 5392.810 kb on - strand at 5392.878 kb on + strand at 5392.879 kb on - strand at 5392.888 kb on + strand at 5392.889 kb on - strand at 5392.889 kb on - strand at 5392.889 kb on - strand at 5392.918 kb on + strand at 5392.919 kb on - strand at 5392.954 kb on + strand at 5392.954 kb on + strand at 5392.954 kb on + strand at 5392.954 kb on + strand at 5392.955 kb on - strand at 5392.955 kb on - strand at 5393.011 kb on + strand at 5393.011 kb on + strand at 5393.012 kb on - strand at 5393.012 kb on - strand at 5393.012 kb on - strand at 5393.012 kb on - strand at 5393.016 kb on - strand at 5393.016 kb on - strand at 5393.016 kb on - strand at 5393.042 kb on + strand at 5393.051 kb on - strand at 5393.101 kb on + strand at 5393.101 kb on + strand at 5393.101 kb on + strand at 5393.101 kb on + strand at 5393.102 kb on - strand at 5393.102 kb on - strand at 5393.102 kb on - strand at 5393.184 kb on + strand at 5393.185 kb on - strand at 5393.185 kb on - strand at 5393.242 kb on + strand at 5393.243 kb on - strand at 5393.243 kb on - strand at 5393.262 kb on + strand at 5393.286 kb on + strand at 5393.329 kb on + strand, within PP_4740 at 5393.448 kb on + strand, within PP_4740 at 5393.449 kb on - strand at 5393.516 kb on + strand, within PP_4740 at 5393.516 kb on + strand, within PP_4740 at 5393.516 kb on + strand, within PP_4740 at 5393.517 kb on - strand, within PP_4740 at 5393.517 kb on - strand, within PP_4740 at 5393.527 kb on + strand, within PP_4740 at 5393.528 kb on - strand, within PP_4740 at 5393.531 kb on - strand, within PP_4740 at 5393.551 kb on - strand, within PP_4740 at 5393.560 kb on + strand, within PP_4740 at 5393.561 kb on - strand, within PP_4740 at 5393.630 kb on + strand, within PP_4740 at 5393.631 kb on - strand, within PP_4740
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 5,391,222 + PP_5707 0.52 +0.8 5,391,288 + PP_5707 0.77 -0.9 5,391,288 + PP_5707 0.77 -1.0 5,391,289 - PP_5707 0.78 +1.0 5,391,289 - PP_5707 0.78 -3.3 5,391,289 - PP_5707 0.78 +1.0 5,391,289 - PP_5707 0.78 -1.3 5,391,366 + +0.6 5,391,366 + +2.4 5,391,366 + -2.9 5,391,366 + -2.0 5,391,367 - +0.0 5,391,453 + PP_5708 0.21 -1.0 5,391,453 + PP_5708 0.21 -0.3 5,391,453 + PP_5708 0.21 -0.4 5,391,454 - PP_5708 0.22 +0.6 5,391,506 + PP_5708 0.48 -0.2 5,391,506 + PP_5708 0.48 -0.1 5,391,506 + PP_5708 0.48 +1.3 5,391,507 - PP_5708 0.48 +0.9 5,391,507 - PP_5708 0.48 +1.1 5,391,507 - PP_5708 0.48 +1.3 5,391,550 + PP_5708 0.70 -1.5 5,391,550 + PP_5708 0.70 +0.6 5,391,566 + PP_5708 0.78 -0.4 5,391,567 - +3.0 5,391,595 + -0.5 5,391,595 + +0.4 5,391,595 + -0.5 5,391,596 - +1.8 5,391,596 - +1.2 5,391,596 - -0.7 5,391,598 + +1.0 5,391,599 - -1.2 5,391,599 - +0.9 5,391,672 + PP_5709 0.17 +0.6 5,391,673 - PP_5709 0.17 -2.0 5,391,673 - PP_5709 0.17 +0.0 5,391,723 + PP_5709 0.36 -4.2 5,391,724 - PP_5709 0.36 -0.6 5,391,724 - PP_5709 0.36 -2.1 5,391,724 - PP_5709 0.36 -1.0 5,391,724 - PP_5709 0.36 +1.1 5,391,728 + PP_5709 0.38 +1.4 5,391,729 - PP_5709 0.38 -0.2 5,391,729 - PP_5709 0.38 -0.3 5,391,729 - PP_5709 0.38 -0.2 5,391,751 + PP_5709 0.46 -0.0 5,391,752 - PP_5709 0.47 +0.5 5,391,796 - PP_5709 0.63 +0.4 5,391,796 - PP_5709 0.63 +1.0 5,391,895 + -3.1 5,391,916 + +0.1 5,391,963 + -0.3 5,392,085 + +1.5 5,392,120 - -0.5 5,392,135 + +0.9 5,392,151 + PP_5710 0.10 -2.0 5,392,154 + PP_5710 0.11 -0.3 5,392,156 + PP_5710 0.11 +0.4 5,392,157 - PP_5710 0.11 -0.7 5,392,157 - PP_5710 0.11 -0.3 5,392,234 + PP_5710 0.25 -0.1 5,392,238 + PP_5710 0.25 +0.2 5,392,238 + PP_5710 0.25 -0.7 5,392,239 - PP_5710 0.25 -0.4 5,392,239 - PP_5710 0.25 -2.4 5,392,310 + PP_5710 0.38 +1.6 5,392,311 - PP_5710 0.38 +0.5 5,392,311 - PP_5710 0.38 -0.7 5,392,311 - PP_5710 0.38 -0.3 5,392,317 - PP_5710 0.39 -1.1 5,392,322 + PP_5710 0.40 -0.8 5,392,322 + PP_5710 0.40 -2.7 5,392,323 - PP_5710 0.40 +0.5 5,392,361 - PP_5710 0.46 -0.7 5,392,368 - PP_5710 0.48 +0.9 5,392,368 - PP_5710 0.48 -1.1 5,392,488 - PP_5710 0.68 +1.0 5,392,545 - PP_5710 0.78 -0.9 5,392,576 + PP_5710 0.83 -1.0 5,392,577 - PP_5710 0.84 -3.2 5,392,605 - PP_5710 0.88 -3.3 5,392,660 + +0.9 5,392,661 - -0.5 5,392,666 + +0.6 5,392,667 - -0.7 5,392,667 - +0.4 5,392,667 - -0.1 5,392,721 + -0.3 5,392,732 + +1.0 5,392,732 + -2.6 5,392,733 - +0.5 5,392,792 + +0.6 5,392,795 + +1.0 5,392,795 + -0.6 5,392,796 - -2.9 5,392,796 - -2.6 5,392,796 - -0.4 5,392,809 + -2.6 5,392,809 + +0.2 5,392,810 - +0.3 5,392,878 + -1.1 5,392,879 - +0.5 5,392,888 + +1.0 5,392,889 - +0.9 5,392,889 - +2.7 5,392,889 - -1.4 5,392,918 + -2.6 5,392,919 - -0.4 5,392,954 + -3.5 5,392,954 + +0.4 5,392,954 + -1.9 5,392,954 + +2.2 5,392,955 - -1.5 5,392,955 - +0.1 5,393,011 + -3.4 5,393,011 + -3.1 5,393,012 - -1.2 5,393,012 - -1.2 5,393,012 - -0.2 5,393,012 - +0.3 5,393,016 - +1.6 5,393,016 - +0.8 5,393,016 - -1.3 5,393,042 + -1.0 5,393,051 - -1.8 5,393,101 + +1.0 5,393,101 + +0.6 5,393,101 + +0.2 5,393,101 + -0.5 5,393,102 - +0.8 5,393,102 - +0.9 5,393,102 - -2.4 5,393,184 + -0.1 5,393,185 - -0.6 5,393,185 - +1.3 5,393,242 + -0.0 5,393,243 - +0.9 5,393,243 - -0.5 5,393,262 + +1.0 5,393,286 + -3.0 5,393,329 + PP_4740 0.11 +1.0 5,393,448 + PP_4740 0.16 -0.1 5,393,449 - -0.8 5,393,516 + PP_4740 0.19 +0.3 5,393,516 + PP_4740 0.19 +0.6 5,393,516 + PP_4740 0.19 -0.6 5,393,517 - PP_4740 0.19 -1.8 5,393,517 - PP_4740 0.19 +0.0 5,393,527 + PP_4740 0.20 -0.7 5,393,528 - PP_4740 0.20 -0.8 5,393,531 - PP_4740 0.20 -0.7 5,393,551 - PP_4740 0.21 +0.9 5,393,560 + PP_4740 0.21 +0.7 5,393,561 - PP_4740 0.21 +1.0 5,393,630 + PP_4740 0.24 -0.9 5,393,631 - PP_4740 0.24 -0.3
Or see this region's nucleotide sequence