Strain Fitness in Pseudomonas putida KT2440 around PP_0895

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0893 and PP_0894 are separated by 30 nucleotidesPP_0894 and PP_0895 are separated by 115 nucleotidesPP_0895 and PP_0896 overlap by 4 nucleotidesPP_0896 and PP_0897 are separated by 115 nucleotides PP_0893: PP_0893 - ThiJ/PfpI family protein, at 1,035,164 to 1,035,751 _0893 PP_0894: PP_0894 - conserved protein of unknown function, at 1,035,782 to 1,036,180 _0894 PP_0895: PP_0895 - conserved protein of unknown function, at 1,036,296 to 1,036,886 _0895 PP_0896: PP_0896 - Carbon-nitrogen hydrolase family protein, at 1,036,883 to 1,037,755 _0896 PP_0897: PP_0897 - Fumarate hydratase, class I, at 1,037,871 to 1,039,394 _0897 Position (kb) 1036 1037Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1035.383 kb on + strand, within PP_0893at 1035.384 kb on - strand, within PP_0893at 1035.413 kb on + strand, within PP_0893at 1035.414 kb on - strand, within PP_0893at 1035.414 kb on - strand, within PP_0893at 1035.724 kb on + strandat 1035.742 kb on + strandat 1035.743 kb on - strandat 1035.743 kb on - strandat 1035.816 kb on + strandat 1035.816 kb on + strandat 1035.817 kb on - strandat 1035.817 kb on - strandat 1035.819 kb on + strandat 1035.819 kb on + strandat 1035.819 kb on + strandat 1035.819 kb on + strandat 1035.819 kb on + strandat 1035.820 kb on - strandat 1035.820 kb on - strandat 1035.853 kb on + strandat 1035.853 kb on + strand, within PP_0894at 1035.855 kb on + strand, within PP_0894at 1035.855 kb on + strand, within PP_0894at 1035.855 kb on + strand, within PP_0894at 1035.855 kb on + strand, within PP_0894at 1035.856 kb on - strand, within PP_0894at 1035.856 kb on - strand, within PP_0894at 1035.856 kb on - strand, within PP_0894at 1035.856 kb on - strand, within PP_0894at 1035.882 kb on + strand, within PP_0894at 1035.882 kb on + strand, within PP_0894at 1035.882 kb on + strand, within PP_0894at 1035.882 kb on + strand, within PP_0894at 1035.882 kb on + strand, within PP_0894at 1035.882 kb on + strand, within PP_0894at 1035.882 kb on + strand, within PP_0894at 1035.883 kb on - strand, within PP_0894at 1035.883 kb on - strand, within PP_0894at 1035.883 kb on - strand, within PP_0894at 1035.883 kb on - strand, within PP_0894at 1035.928 kb on - strand, within PP_0894at 1035.928 kb on - strand, within PP_0894at 1036.149 kb on + strandat 1036.150 kb on - strandat 1036.150 kb on - strandat 1036.153 kb on - strandat 1036.153 kb on - strandat 1036.153 kb on - strandat 1036.161 kb on - strandat 1036.200 kb on - strandat 1036.200 kb on - strandat 1036.219 kb on - strandat 1036.219 kb on - strandat 1036.219 kb on - strandat 1036.231 kb on - strandat 1036.303 kb on + strandat 1036.303 kb on + strandat 1036.303 kb on + strandat 1036.335 kb on + strandat 1036.336 kb on - strandat 1036.336 kb on - strandat 1036.364 kb on + strand, within PP_0895at 1036.365 kb on - strand, within PP_0895at 1036.392 kb on + strand, within PP_0895at 1036.392 kb on + strand, within PP_0895at 1036.392 kb on + strand, within PP_0895at 1036.392 kb on + strand, within PP_0895at 1036.423 kb on - strand, within PP_0895at 1036.434 kb on + strand, within PP_0895at 1036.434 kb on + strand, within PP_0895at 1036.435 kb on - strand, within PP_0895at 1036.435 kb on - strand, within PP_0895at 1036.435 kb on - strand, within PP_0895at 1036.499 kb on + strand, within PP_0895at 1036.578 kb on + strand, within PP_0895at 1036.578 kb on + strand, within PP_0895at 1036.579 kb on - strand, within PP_0895at 1036.579 kb on - strand, within PP_0895at 1036.579 kb on - strand, within PP_0895at 1036.582 kb on - strand, within PP_0895at 1036.582 kb on - strand, within PP_0895at 1036.612 kb on - strand, within PP_0895at 1036.660 kb on - strandat 1036.660 kb on - strand, within PP_0895at 1036.660 kb on - strand, within PP_0895at 1036.687 kb on - strand, within PP_0895at 1036.809 kb on + strand, within PP_0895at 1036.810 kb on - strand, within PP_0895at 1036.908 kb on - strandat 1037.147 kb on + strand, within PP_0896at 1037.147 kb on + strand, within PP_0896at 1037.147 kb on + strand, within PP_0896at 1037.148 kb on - strand, within PP_0896at 1037.148 kb on - strand, within PP_0896at 1037.148 kb on - strand, within PP_0896at 1037.192 kb on + strand, within PP_0896at 1037.351 kb on + strand, within PP_0896at 1037.425 kb on + strand, within PP_0896at 1037.425 kb on + strand, within PP_0896at 1037.426 kb on - strand, within PP_0896at 1037.458 kb on + strand, within PP_0896at 1037.459 kb on - strand, within PP_0896at 1037.459 kb on - strand, within PP_0896at 1037.668 kb on - strandat 1037.820 kb on + strandat 1037.873 kb on - strandat 1037.873 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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1,035,383 + PP_0893 0.37 +0.8
1,035,384 - PP_0893 0.37 -3.8
1,035,413 + PP_0893 0.42 -2.0
1,035,414 - PP_0893 0.43 -0.3
1,035,414 - PP_0893 0.43 -0.2
1,035,724 + -0.1
1,035,742 + +1.2
1,035,743 - +0.5
1,035,743 - +0.4
1,035,816 + -0.1
1,035,816 + +0.2
1,035,817 - +0.4
1,035,817 - +0.6
1,035,819 + -0.3
1,035,819 + +0.7
1,035,819 + -1.0
1,035,819 + -0.4
1,035,819 + -0.4
1,035,820 - +0.1
1,035,820 - -0.7
1,035,853 + +1.9
1,035,853 + PP_0894 0.18 +0.5
1,035,855 + PP_0894 0.18 -0.2
1,035,855 + PP_0894 0.18 +0.2
1,035,855 + PP_0894 0.18 +0.1
1,035,855 + PP_0894 0.18 +1.1
1,035,856 - PP_0894 0.19 -0.7
1,035,856 - PP_0894 0.19 -1.6
1,035,856 - PP_0894 0.19 +0.7
1,035,856 - PP_0894 0.19 +0.3
1,035,882 + PP_0894 0.25 +0.7
1,035,882 + PP_0894 0.25 +1.3
1,035,882 + PP_0894 0.25 -0.9
1,035,882 + PP_0894 0.25 -0.4
1,035,882 + PP_0894 0.25 +0.6
1,035,882 + PP_0894 0.25 +1.4
1,035,882 + PP_0894 0.25 -1.7
1,035,883 - PP_0894 0.25 -1.2
1,035,883 - PP_0894 0.25 -0.6
1,035,883 - PP_0894 0.25 -1.0
1,035,883 - PP_0894 0.25 -0.0
1,035,928 - PP_0894 0.37 -0.7
1,035,928 - PP_0894 0.37 +0.5
1,036,149 + -1.5
1,036,150 - +0.9
1,036,150 - +1.3
1,036,153 - +0.6
1,036,153 - -0.8
1,036,153 - -0.6
1,036,161 - +0.5
1,036,200 - +0.8
1,036,200 - +1.2
1,036,219 - -2.0
1,036,219 - -0.8
1,036,219 - +0.5
1,036,231 - -0.8
1,036,303 + -0.7
1,036,303 + -0.1
1,036,303 + -0.7
1,036,335 + +0.8
1,036,336 - -0.5
1,036,336 - -0.8
1,036,364 + PP_0895 0.12 -0.4
1,036,365 - PP_0895 0.12 -0.4
1,036,392 + PP_0895 0.16 +0.9
1,036,392 + PP_0895 0.16 -2.1
1,036,392 + PP_0895 0.16 -0.0
1,036,392 + PP_0895 0.16 +0.1
1,036,423 - PP_0895 0.21 -2.1
1,036,434 + PP_0895 0.23 -1.1
1,036,434 + PP_0895 0.23 -1.0
1,036,435 - PP_0895 0.24 -2.9
1,036,435 - PP_0895 0.24 -4.2
1,036,435 - PP_0895 0.24 -0.2
1,036,499 + PP_0895 0.34 -2.5
1,036,578 + PP_0895 0.48 +0.2
1,036,578 + PP_0895 0.48 +0.3
1,036,579 - PP_0895 0.48 +1.3
1,036,579 - PP_0895 0.48 -1.0
1,036,579 - PP_0895 0.48 -0.3
1,036,582 - PP_0895 0.48 -0.8
1,036,582 - PP_0895 0.48 -0.0
1,036,612 - PP_0895 0.53 +0.1
1,036,660 - +0.3
1,036,660 - PP_0895 0.62 +0.8
1,036,660 - PP_0895 0.62 -0.5
1,036,687 - PP_0895 0.66 -0.1
1,036,809 + PP_0895 0.87 -2.1
1,036,810 - PP_0895 0.87 -2.1
1,036,908 - -1.1
1,037,147 + PP_0896 0.30 +0.3
1,037,147 + PP_0896 0.30 -3.0
1,037,147 + PP_0896 0.30 +2.3
1,037,148 - PP_0896 0.30 -0.5
1,037,148 - PP_0896 0.30 +0.5
1,037,148 - PP_0896 0.30 -0.3
1,037,192 + PP_0896 0.35 +0.4
1,037,351 + PP_0896 0.54 -0.5
1,037,425 + PP_0896 0.62 +0.7
1,037,425 + PP_0896 0.62 +0.5
1,037,426 - PP_0896 0.62 +1.1
1,037,458 + PP_0896 0.66 +0.5
1,037,459 - PP_0896 0.66 +0.2
1,037,459 - PP_0896 0.66 +0.8
1,037,668 - -1.7
1,037,820 + -3.9
1,037,873 - -3.0
1,037,873 - +0.2

Or see this region's nucleotide sequence