Strain Fitness in Pseudomonas putida KT2440 around PP_4406

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4405 and PP_4406 are separated by 215 nucleotidesPP_4406 and PP_4407 are separated by 304 nucleotides PP_4405: PP_4405 - Sensory box protein, at 4,997,102 to 4,998,100 _4405 PP_4406: PP_4406 - conserved protein of unknown function, at 4,998,316 to 4,998,843 _4406 PP_4407: PP_4407 - putative Gamma-aminobutyrate transporter, at 4,999,148 to 5,000,530 _4407 Position (kb) 4998 4999Strain fitness (log2 ratio) -3 -2 -1 0 1at 4997.427 kb on + strand, within PP_4405at 4997.758 kb on + strand, within PP_4405at 4997.796 kb on + strand, within PP_4405at 4997.796 kb on + strand, within PP_4405at 4997.796 kb on + strand, within PP_4405at 4997.796 kb on + strand, within PP_4405at 4997.796 kb on + strand, within PP_4405at 4997.796 kb on + strand, within PP_4405at 4997.797 kb on - strand, within PP_4405at 4997.823 kb on + strand, within PP_4405at 4997.823 kb on + strand, within PP_4405at 4997.824 kb on - strand, within PP_4405at 4997.859 kb on + strand, within PP_4405at 4997.859 kb on + strand, within PP_4405at 4997.859 kb on + strand, within PP_4405at 4997.859 kb on + strand, within PP_4405at 4997.859 kb on + strand, within PP_4405at 4997.889 kb on + strand, within PP_4405at 4997.890 kb on - strand, within PP_4405at 4997.920 kb on + strand, within PP_4405at 4997.920 kb on + strand, within PP_4405at 4997.921 kb on - strand, within PP_4405at 4997.952 kb on + strand, within PP_4405at 4997.967 kb on + strand, within PP_4405at 4997.968 kb on - strand, within PP_4405at 4997.992 kb on - strand, within PP_4405at 4997.992 kb on - strand, within PP_4405at 4998.077 kb on + strandat 4998.189 kb on + strandat 4998.204 kb on + strandat 4998.204 kb on + strandat 4998.204 kb on + strandat 4998.204 kb on + strandat 4998.205 kb on - strandat 4998.205 kb on - strandat 4998.205 kb on - strandat 4998.205 kb on - strandat 4998.205 kb on - strandat 4998.205 kb on - strandat 4998.205 kb on - strandat 4998.205 kb on - strandat 4998.320 kb on + strandat 4998.320 kb on + strandat 4998.321 kb on - strandat 4998.370 kb on + strand, within PP_4406at 4998.536 kb on + strand, within PP_4406at 4998.682 kb on + strand, within PP_4406at 4998.868 kb on + strandat 4998.868 kb on + strandat 4999.033 kb on + strandat 4999.033 kb on + strandat 4999.033 kb on + strandat 4999.034 kb on - strandat 4999.034 kb on - strandat 4999.034 kb on - strandat 4999.056 kb on + strandat 4999.056 kb on + strandat 4999.056 kb on + strandat 4999.056 kb on + strandat 4999.057 kb on - strandat 4999.060 kb on + strandat 4999.060 kb on + strandat 4999.061 kb on - strandat 4999.061 kb on - strandat 4999.061 kb on - strandat 4999.061 kb on - strandat 4999.189 kb on + strandat 4999.189 kb on + strandat 4999.190 kb on - strandat 4999.190 kb on - strandat 4999.190 kb on - strandat 4999.190 kb on - strandat 4999.278 kb on + strandat 4999.279 kb on - strandat 4999.286 kb on + strandat 4999.376 kb on + strand, within PP_4407at 4999.389 kb on - strand, within PP_4407at 4999.389 kb on - strand, within PP_4407at 4999.389 kb on - strand, within PP_4407at 4999.562 kb on + strand, within PP_4407at 4999.587 kb on + strand, within PP_4407at 4999.592 kb on + strand, within PP_4407at 4999.593 kb on - strand, within PP_4407at 4999.593 kb on - strand, within PP_4407at 4999.627 kb on + strand, within PP_4407at 4999.627 kb on + strand, within PP_4407at 4999.627 kb on + strand, within PP_4407at 4999.628 kb on - strand, within PP_4407at 4999.628 kb on - strand, within PP_4407at 4999.628 kb on - strand, within PP_4407at 4999.675 kb on + strand, within PP_4407at 4999.676 kb on - strand, within PP_4407at 4999.676 kb on - strand, within PP_4407at 4999.676 kb on - strand, within PP_4407at 4999.676 kb on - strand, within PP_4407at 4999.676 kb on - strand, within PP_4407

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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4,997,427 + PP_4405 0.33 -1.2
4,997,758 + PP_4405 0.66 +0.4
4,997,796 + PP_4405 0.69 +0.2
4,997,796 + PP_4405 0.69 +0.7
4,997,796 + PP_4405 0.69 -0.3
4,997,796 + PP_4405 0.69 -0.5
4,997,796 + PP_4405 0.69 +0.6
4,997,796 + PP_4405 0.69 -0.7
4,997,797 - PP_4405 0.70 -0.7
4,997,823 + PP_4405 0.72 -0.7
4,997,823 + PP_4405 0.72 +0.8
4,997,824 - PP_4405 0.72 +0.8
4,997,859 + PP_4405 0.76 +0.2
4,997,859 + PP_4405 0.76 +0.9
4,997,859 + PP_4405 0.76 +0.8
4,997,859 + PP_4405 0.76 -0.0
4,997,859 + PP_4405 0.76 -0.0
4,997,889 + PP_4405 0.79 -0.0
4,997,890 - PP_4405 0.79 -2.0
4,997,920 + PP_4405 0.82 +1.0
4,997,920 + PP_4405 0.82 -0.2
4,997,921 - PP_4405 0.82 +0.5
4,997,952 + PP_4405 0.85 -0.3
4,997,967 + PP_4405 0.87 -0.1
4,997,968 - PP_4405 0.87 -0.4
4,997,992 - PP_4405 0.89 -1.2
4,997,992 - PP_4405 0.89 -0.3
4,998,077 + -0.1
4,998,189 + +0.1
4,998,204 + +0.7
4,998,204 + -0.1
4,998,204 + -1.1
4,998,204 + -0.2
4,998,205 - -1.8
4,998,205 - -0.2
4,998,205 - +0.8
4,998,205 - +0.1
4,998,205 - -0.5
4,998,205 - +0.8
4,998,205 - -0.9
4,998,205 - +0.8
4,998,320 + +0.3
4,998,320 + +0.7
4,998,321 - +0.0
4,998,370 + PP_4406 0.10 -2.7
4,998,536 + PP_4406 0.42 +1.4
4,998,682 + PP_4406 0.69 +1.0
4,998,868 + +0.1
4,998,868 + -0.2
4,999,033 + -0.8
4,999,033 + +0.5
4,999,033 + -1.0
4,999,034 - +0.1
4,999,034 - -0.5
4,999,034 - -0.5
4,999,056 + -2.9
4,999,056 + -1.1
4,999,056 + -0.1
4,999,056 + -0.9
4,999,057 - -2.7
4,999,060 + -0.8
4,999,060 + +0.0
4,999,061 - -1.4
4,999,061 - -0.1
4,999,061 - +0.4
4,999,061 - -0.0
4,999,189 + -1.5
4,999,189 + -1.4
4,999,190 - -0.4
4,999,190 - -0.3
4,999,190 - -0.5
4,999,190 - -0.1
4,999,278 + +1.4
4,999,279 - +0.6
4,999,286 + +0.0
4,999,376 + PP_4407 0.16 +0.8
4,999,389 - PP_4407 0.17 +0.4
4,999,389 - PP_4407 0.17 +0.0
4,999,389 - PP_4407 0.17 -0.0
4,999,562 + PP_4407 0.30 -0.8
4,999,587 + PP_4407 0.32 +0.6
4,999,592 + PP_4407 0.32 -0.4
4,999,593 - PP_4407 0.32 +0.6
4,999,593 - PP_4407 0.32 -0.3
4,999,627 + PP_4407 0.35 -0.5
4,999,627 + PP_4407 0.35 +0.2
4,999,627 + PP_4407 0.35 +0.9
4,999,628 - PP_4407 0.35 -0.3
4,999,628 - PP_4407 0.35 +0.4
4,999,628 - PP_4407 0.35 +0.7
4,999,675 + PP_4407 0.38 -0.1
4,999,676 - PP_4407 0.38 -1.1
4,999,676 - PP_4407 0.38 +0.0
4,999,676 - PP_4407 0.38 +0.1
4,999,676 - PP_4407 0.38 -0.5
4,999,676 - PP_4407 0.38 -0.5

Or see this region's nucleotide sequence