Strain Fitness in Pseudomonas putida KT2440 around PP_3496

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3494 and PP_3495 are separated by 1 nucleotidesPP_3495 and PP_3496 are separated by 118 nucleotidesPP_3496 and PP_3497 are separated by 213 nucleotides PP_3494: PP_3494 - conserved exported protein of unknown function, at 3,964,123 to 3,964,383 _3494 PP_3495: PP_3495 - tRNA (adenine(22)-N(1))-methyltransferase, at 3,964,385 to 3,965,077 _3495 PP_3496: PP_3496 - Endoribonuclease L-PSP, at 3,965,196 to 3,965,594 _3496 PP_3497: PP_3497 - putative peptidase, at 3,965,808 to 3,967,808 _3497 Position (kb) 3965 3966Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3964.220 kb on - strand, within PP_3494at 3964.220 kb on - strand, within PP_3494at 3964.225 kb on + strand, within PP_3494at 3964.225 kb on + strand, within PP_3494at 3964.226 kb on - strand, within PP_3494at 3964.315 kb on + strand, within PP_3494at 3964.315 kb on + strand, within PP_3494at 3964.315 kb on + strand, within PP_3494at 3964.315 kb on + strand, within PP_3494at 3964.315 kb on + strand, within PP_3494at 3964.315 kb on + strand, within PP_3494at 3964.316 kb on - strand, within PP_3494at 3964.316 kb on - strand, within PP_3494at 3964.316 kb on - strand, within PP_3494at 3964.316 kb on - strand, within PP_3494at 3964.563 kb on + strand, within PP_3495at 3964.564 kb on - strand, within PP_3495at 3964.581 kb on + strand, within PP_3495at 3964.581 kb on + strand, within PP_3495at 3964.581 kb on + strand, within PP_3495at 3964.582 kb on - strand, within PP_3495at 3964.582 kb on - strand, within PP_3495at 3964.582 kb on - strand, within PP_3495at 3964.582 kb on - strand, within PP_3495at 3964.813 kb on + strand, within PP_3495at 3964.862 kb on + strand, within PP_3495at 3964.952 kb on + strand, within PP_3495at 3965.027 kb on + strandat 3965.027 kb on + strandat 3965.028 kb on - strandat 3965.028 kb on - strandat 3965.028 kb on - strandat 3965.028 kb on - strandat 3965.028 kb on - strandat 3965.028 kb on - strandat 3965.080 kb on + strandat 3965.080 kb on + strandat 3965.081 kb on - strandat 3965.235 kb on + strandat 3965.235 kb on + strandat 3965.236 kb on - strand, within PP_3496at 3965.236 kb on - strand, within PP_3496at 3965.442 kb on + strand, within PP_3496at 3965.442 kb on + strand, within PP_3496at 3965.442 kb on + strand, within PP_3496at 3965.443 kb on - strand, within PP_3496at 3965.443 kb on - strand, within PP_3496at 3965.485 kb on - strand, within PP_3496at 3965.681 kb on + strandat 3965.765 kb on + strandat 3965.778 kb on + strandat 3965.779 kb on - strandat 3965.800 kb on - strandat 3965.800 kb on - strandat 3965.802 kb on - strandat 3965.901 kb on + strandat 3965.901 kb on + strandat 3965.901 kb on + strandat 3965.902 kb on - strandat 3965.902 kb on - strandat 3965.902 kb on - strandat 3965.902 kb on - strandat 3965.902 kb on - strandat 3965.902 kb on - strandat 3965.988 kb on + strandat 3965.989 kb on - strandat 3965.989 kb on - strandat 3966.072 kb on + strand, within PP_3497at 3966.072 kb on + strand, within PP_3497at 3966.073 kb on - strand, within PP_3497at 3966.073 kb on - strand, within PP_3497at 3966.540 kb on + strand, within PP_3497at 3966.541 kb on - strand, within PP_3497at 3966.555 kb on + strand, within PP_3497at 3966.555 kb on + strand, within PP_3497at 3966.556 kb on - strand, within PP_3497at 3966.556 kb on - strand, within PP_3497

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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3,964,220 - PP_3494 0.37 -0.4
3,964,220 - PP_3494 0.37 -0.5
3,964,225 + PP_3494 0.39 +0.1
3,964,225 + PP_3494 0.39 +0.2
3,964,226 - PP_3494 0.39 -0.2
3,964,315 + PP_3494 0.74 +0.5
3,964,315 + PP_3494 0.74 +0.1
3,964,315 + PP_3494 0.74 +0.1
3,964,315 + PP_3494 0.74 +0.1
3,964,315 + PP_3494 0.74 +0.9
3,964,315 + PP_3494 0.74 +0.4
3,964,316 - PP_3494 0.74 -0.3
3,964,316 - PP_3494 0.74 +0.1
3,964,316 - PP_3494 0.74 -0.3
3,964,316 - PP_3494 0.74 +0.8
3,964,563 + PP_3495 0.26 -0.2
3,964,564 - PP_3495 0.26 -0.1
3,964,581 + PP_3495 0.28 +0.7
3,964,581 + PP_3495 0.28 -0.2
3,964,581 + PP_3495 0.28 -0.2
3,964,582 - PP_3495 0.28 -0.2
3,964,582 - PP_3495 0.28 -1.0
3,964,582 - PP_3495 0.28 -0.1
3,964,582 - PP_3495 0.28 +0.4
3,964,813 + PP_3495 0.62 +1.0
3,964,862 + PP_3495 0.69 +0.8
3,964,952 + PP_3495 0.82 +0.7
3,965,027 + -0.1
3,965,027 + +0.7
3,965,028 - -0.5
3,965,028 - +0.1
3,965,028 - -0.3
3,965,028 - +1.1
3,965,028 - -1.3
3,965,028 - -0.2
3,965,080 + -0.1
3,965,080 + -0.7
3,965,081 - -3.7
3,965,235 + -0.2
3,965,235 + +1.7
3,965,236 - PP_3496 0.10 +0.5
3,965,236 - PP_3496 0.10 +0.9
3,965,442 + PP_3496 0.62 +1.4
3,965,442 + PP_3496 0.62 +0.3
3,965,442 + PP_3496 0.62 +0.9
3,965,443 - PP_3496 0.62 +1.4
3,965,443 - PP_3496 0.62 +0.6
3,965,485 - PP_3496 0.72 +0.2
3,965,681 + +0.3
3,965,765 + -0.4
3,965,778 + +0.0
3,965,779 - -0.9
3,965,800 - -0.1
3,965,800 - +0.0
3,965,802 - +1.1
3,965,901 + +1.0
3,965,901 + -0.6
3,965,901 + +1.3
3,965,902 - +1.2
3,965,902 - +0.2
3,965,902 - +1.0
3,965,902 - +0.6
3,965,902 - -0.0
3,965,902 - -0.5
3,965,988 + +0.3
3,965,989 - +1.4
3,965,989 - +0.1
3,966,072 + PP_3497 0.13 +0.4
3,966,072 + PP_3497 0.13 +2.6
3,966,073 - PP_3497 0.13 +0.1
3,966,073 - PP_3497 0.13 +0.4
3,966,540 + PP_3497 0.37 +0.1
3,966,541 - PP_3497 0.37 -1.1
3,966,555 + PP_3497 0.37 +0.3
3,966,555 + PP_3497 0.37 -1.5
3,966,556 - PP_3497 0.37 +0.1
3,966,556 - PP_3497 0.37 +0.4

Or see this region's nucleotide sequence