Strain Fitness in Pseudomonas putida KT2440 around PP_3050

Experiment: Growth at pH6 and (C) D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_3047 and PP_3048 overlap by 4 nucleotidesPP_3048 and PP_3049 overlap by 4 nucleotidesPP_3049 and PP_3050 overlap by 8 nucleotidesPP_3050 and PP_3051 overlap by 4 nucleotidesPP_3051 and PP_3052 are separated by 42 nucleotidesPP_3052 and PP_3053 are separated by 2 nucleotides PP_3047: PP_3047 - conserved protein of unknown function, at 3,431,358 to 3,432,353 _3047 PP_3048: PP_3048 - conserved protein of unknown function, at 3,432,350 to 3,432,670 _3048 PP_3049: PP_3049 - conserved protein of unknown function, at 3,432,667 to 3,433,329 _3049 PP_3050: PP_3050 - conserved protein of unknown function, at 3,433,322 to 3,433,852 _3050 PP_3051: PP_3051 - Pyocin R2_PP, tail spike protein, at 3,433,849 to 3,434,451 _3051 PP_3052: PP_3052 - conserved protein of unknown function, at 3,434,494 to 3,434,763 _3052 PP_3053: PP_3053 - Pyocin R2_PP, baseplate protein, at 3,434,766 to 3,435,092 _3053 Position (kb) 3433 3434Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3432.602 kb on + strand, within PP_3048at 3432.603 kb on - strandat 3432.603 kb on - strand, within PP_3048at 3432.603 kb on - strand, within PP_3048at 3432.642 kb on + strandat 3432.643 kb on - strandat 3432.643 kb on - strandat 3432.666 kb on + strandat 3432.667 kb on - strandat 3432.679 kb on - strandat 3432.679 kb on - strandat 3432.679 kb on - strandat 3432.682 kb on + strandat 3432.682 kb on + strandat 3432.852 kb on - strand, within PP_3049at 3432.852 kb on - strand, within PP_3049at 3432.852 kb on - strand, within PP_3049at 3432.873 kb on + strand, within PP_3049at 3432.873 kb on + strand, within PP_3049at 3432.873 kb on + strand, within PP_3049at 3433.021 kb on + strand, within PP_3049at 3433.048 kb on + strand, within PP_3049at 3433.077 kb on + strand, within PP_3049at 3433.125 kb on - strand, within PP_3049at 3433.262 kb on + strand, within PP_3049at 3433.262 kb on + strand, within PP_3049at 3433.262 kb on + strand, within PP_3049at 3433.303 kb on + strandat 3433.355 kb on + strandat 3433.403 kb on + strand, within PP_3050at 3433.404 kb on - strand, within PP_3050at 3433.562 kb on - strand, within PP_3050at 3433.562 kb on - strand, within PP_3050at 3433.575 kb on + strand, within PP_3050at 3433.575 kb on + strand, within PP_3050at 3433.575 kb on + strand, within PP_3050at 3433.575 kb on + strand, within PP_3050at 3433.575 kb on + strand, within PP_3050at 3433.575 kb on + strand, within PP_3050at 3433.576 kb on - strand, within PP_3050at 3433.576 kb on - strand, within PP_3050at 3433.576 kb on - strand, within PP_3050at 3433.576 kb on - strand, within PP_3050at 3433.576 kb on - strand, within PP_3050at 3433.826 kb on + strandat 3433.827 kb on - strandat 3433.827 kb on - strandat 3433.827 kb on - strandat 3433.906 kb on + strandat 3433.906 kb on + strandat 3433.907 kb on - strandat 3434.179 kb on + strand, within PP_3051at 3434.196 kb on + strand, within PP_3051at 3434.197 kb on - strand, within PP_3051at 3434.200 kb on + strand, within PP_3051at 3434.201 kb on - strand, within PP_3051at 3434.201 kb on - strand, within PP_3051at 3434.382 kb on - strand, within PP_3051at 3434.494 kb on - strandat 3434.617 kb on + strand, within PP_3052at 3434.799 kb on - strand, within PP_3053at 3434.799 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
remove
3,432,602 + PP_3048 0.79 +0.1
3,432,603 - +2.6
3,432,603 - PP_3048 0.79 +0.4
3,432,603 - PP_3048 0.79 +0.4
3,432,642 + +0.1
3,432,643 - +0.7
3,432,643 - +1.1
3,432,666 + -1.4
3,432,667 - +0.1
3,432,679 - -1.0
3,432,679 - +0.7
3,432,679 - +0.3
3,432,682 + +0.1
3,432,682 + -0.5
3,432,852 - PP_3049 0.28 +0.7
3,432,852 - PP_3049 0.28 -1.6
3,432,852 - PP_3049 0.28 -1.1
3,432,873 + PP_3049 0.31 +0.6
3,432,873 + PP_3049 0.31 -1.8
3,432,873 + PP_3049 0.31 +0.8
3,433,021 + PP_3049 0.53 +0.2
3,433,048 + PP_3049 0.57 -3.0
3,433,077 + PP_3049 0.62 -0.5
3,433,125 - PP_3049 0.69 -0.1
3,433,262 + PP_3049 0.90 +0.0
3,433,262 + PP_3049 0.90 +0.3
3,433,262 + PP_3049 0.90 +0.2
3,433,303 + +0.4
3,433,355 + -0.7
3,433,403 + PP_3050 0.15 +0.6
3,433,404 - PP_3050 0.15 +0.3
3,433,562 - PP_3050 0.45 -0.3
3,433,562 - PP_3050 0.45 -0.9
3,433,575 + PP_3050 0.48 +0.0
3,433,575 + PP_3050 0.48 -1.0
3,433,575 + PP_3050 0.48 +2.3
3,433,575 + PP_3050 0.48 +0.3
3,433,575 + PP_3050 0.48 +0.5
3,433,575 + PP_3050 0.48 +1.2
3,433,576 - PP_3050 0.48 +0.8
3,433,576 - PP_3050 0.48 +0.8
3,433,576 - PP_3050 0.48 +1.6
3,433,576 - PP_3050 0.48 +0.4
3,433,576 - PP_3050 0.48 +0.7
3,433,826 + +0.0
3,433,827 - +0.4
3,433,827 - -3.0
3,433,827 - +0.1
3,433,906 + -0.6
3,433,906 + -1.0
3,433,907 - +0.6
3,434,179 + PP_3051 0.55 -1.5
3,434,196 + PP_3051 0.58 +0.6
3,434,197 - PP_3051 0.58 +0.3
3,434,200 + PP_3051 0.58 -0.5
3,434,201 - PP_3051 0.58 +0.0
3,434,201 - PP_3051 0.58 -0.6
3,434,382 - PP_3051 0.88 +1.0
3,434,494 - +0.6
3,434,617 + PP_3052 0.46 +0.3
3,434,799 - PP_3053 0.10 -1.9
3,434,799 - +1.0

Or see this region's nucleotide sequence