Strain Fitness in Pseudomonas putida KT2440 around PP_1713

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1712 and PP_1713 are separated by 162 nucleotidesPP_1713 and PP_1714 are separated by 253 nucleotides PP_1712: PP_1712 - conserved protein of unknown function, at 1,912,062 to 1,913,471 _1712 PP_1713: PP_1713 - Transcriptional regulator PcaQ, at 1,913,634 to 1,914,566 _1713 PP_1714: PP_1714 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,914,820 to 1,915,572 _1714 Position (kb) 1913 1914 1915Strain fitness (log2 ratio) -3 -2 -1 0 1at 1912.634 kb on - strand, within PP_1712at 1912.634 kb on - strand, within PP_1712at 1912.769 kb on + strand, within PP_1712at 1912.769 kb on + strand, within PP_1712at 1912.770 kb on - strand, within PP_1712at 1912.770 kb on - strand, within PP_1712at 1912.770 kb on - strand, within PP_1712at 1912.770 kb on - strand, within PP_1712at 1912.907 kb on + strand, within PP_1712at 1912.908 kb on - strand, within PP_1712at 1912.909 kb on + strand, within PP_1712at 1912.909 kb on + strand, within PP_1712at 1912.909 kb on + strand, within PP_1712at 1912.909 kb on + strand, within PP_1712at 1912.909 kb on + strand, within PP_1712at 1912.976 kb on + strand, within PP_1712at 1913.031 kb on + strand, within PP_1712at 1913.032 kb on - strand, within PP_1712at 1913.032 kb on - strand, within PP_1712at 1913.151 kb on + strand, within PP_1712at 1913.151 kb on + strand, within PP_1712at 1913.152 kb on - strand, within PP_1712at 1913.152 kb on - strand, within PP_1712at 1913.185 kb on + strand, within PP_1712at 1913.185 kb on + strand, within PP_1712at 1913.186 kb on - strand, within PP_1712at 1913.186 kb on - strand, within PP_1712at 1913.186 kb on - strand, within PP_1712at 1913.284 kb on + strand, within PP_1712at 1913.285 kb on - strand, within PP_1712at 1913.310 kb on + strand, within PP_1712at 1913.385 kb on + strandat 1913.385 kb on + strandat 1913.426 kb on + strandat 1913.426 kb on + strandat 1913.427 kb on - strandat 1913.427 kb on - strandat 1913.496 kb on - strandat 1913.496 kb on - strandat 1913.524 kb on - strandat 1913.569 kb on + strandat 1913.569 kb on + strandat 1913.569 kb on + strandat 1913.569 kb on + strandat 1913.569 kb on + strandat 1913.569 kb on + strandat 1913.570 kb on - strandat 1913.570 kb on - strandat 1913.570 kb on - strandat 1913.570 kb on - strandat 1913.570 kb on - strandat 1913.570 kb on - strandat 1913.570 kb on - strandat 1913.600 kb on - strandat 1913.611 kb on - strandat 1913.659 kb on - strandat 1914.135 kb on + strand, within PP_1713at 1914.135 kb on + strand, within PP_1713at 1914.346 kb on - strandat 1914.554 kb on + strandat 1914.554 kb on + strandat 1914.554 kb on + strandat 1914.555 kb on - strandat 1914.558 kb on + strandat 1914.559 kb on - strandat 1914.620 kb on - strandat 1914.663 kb on - strandat 1914.663 kb on - strandat 1914.701 kb on + strandat 1914.702 kb on - strandat 1914.702 kb on - strandat 1914.734 kb on + strandat 1914.766 kb on + strandat 1914.767 kb on - strandat 1914.767 kb on - strandat 1914.767 kb on - strandat 1914.767 kb on - strandat 1914.816 kb on + strandat 1914.816 kb on + strandat 1914.817 kb on - strandat 1914.817 kb on - strandat 1914.857 kb on + strandat 1914.931 kb on + strand, within PP_1714at 1914.931 kb on + strand, within PP_1714at 1914.932 kb on - strand, within PP_1714at 1915.026 kb on + strand, within PP_1714at 1915.064 kb on + strand, within PP_1714at 1915.204 kb on + strand, within PP_1714at 1915.205 kb on - strand, within PP_1714at 1915.268 kb on - strand, within PP_1714at 1915.399 kb on + strand, within PP_1714at 1915.399 kb on + strand, within PP_1714at 1915.429 kb on + strand, within PP_1714

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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1,912,634 - PP_1712 0.41 +0.0
1,912,634 - PP_1712 0.41 +1.4
1,912,769 + PP_1712 0.50 +0.3
1,912,769 + PP_1712 0.50 +0.6
1,912,770 - PP_1712 0.50 -0.8
1,912,770 - PP_1712 0.50 -2.0
1,912,770 - PP_1712 0.50 -1.4
1,912,770 - PP_1712 0.50 +0.3
1,912,907 + PP_1712 0.60 +0.5
1,912,908 - PP_1712 0.60 -0.1
1,912,909 + PP_1712 0.60 -0.9
1,912,909 + PP_1712 0.60 +0.3
1,912,909 + PP_1712 0.60 +0.3
1,912,909 + PP_1712 0.60 +0.3
1,912,909 + PP_1712 0.60 -2.8
1,912,976 + PP_1712 0.65 +0.3
1,913,031 + PP_1712 0.69 +0.1
1,913,032 - PP_1712 0.69 -0.5
1,913,032 - PP_1712 0.69 +1.1
1,913,151 + PP_1712 0.77 +1.4
1,913,151 + PP_1712 0.77 -0.9
1,913,152 - PP_1712 0.77 -0.2
1,913,152 - PP_1712 0.77 +0.2
1,913,185 + PP_1712 0.80 -0.7
1,913,185 + PP_1712 0.80 +0.4
1,913,186 - PP_1712 0.80 -0.3
1,913,186 - PP_1712 0.80 +0.9
1,913,186 - PP_1712 0.80 +0.3
1,913,284 + PP_1712 0.87 +0.1
1,913,285 - PP_1712 0.87 -0.5
1,913,310 + PP_1712 0.89 -0.4
1,913,385 + +0.1
1,913,385 + +0.4
1,913,426 + +1.1
1,913,426 + +0.7
1,913,427 - -0.1
1,913,427 - +0.9
1,913,496 - -0.8
1,913,496 - +0.2
1,913,524 - +0.4
1,913,569 + -0.1
1,913,569 + -0.4
1,913,569 + +0.1
1,913,569 + +0.1
1,913,569 + -0.2
1,913,569 + -0.1
1,913,570 - +0.3
1,913,570 - -1.6
1,913,570 - -0.1
1,913,570 - +0.5
1,913,570 - +0.1
1,913,570 - -0.4
1,913,570 - +0.4
1,913,600 - +0.1
1,913,611 - -3.2
1,913,659 - +0.2
1,914,135 + PP_1713 0.54 +0.6
1,914,135 + PP_1713 0.54 +0.7
1,914,346 - -0.6
1,914,554 + +0.8
1,914,554 + -0.1
1,914,554 + +0.6
1,914,555 - +1.6
1,914,558 + -1.0
1,914,559 - -0.2
1,914,620 - +0.3
1,914,663 - -2.9
1,914,663 - -0.7
1,914,701 + +0.1
1,914,702 - +0.2
1,914,702 - +0.8
1,914,734 + +0.1
1,914,766 + +0.2
1,914,767 - +0.2
1,914,767 - -0.4
1,914,767 - -1.4
1,914,767 - +0.5
1,914,816 + +0.6
1,914,816 + -1.6
1,914,817 - +0.5
1,914,817 - -0.4
1,914,857 + -1.1
1,914,931 + PP_1714 0.15 +0.6
1,914,931 + PP_1714 0.15 -0.1
1,914,932 - PP_1714 0.15 +0.4
1,915,026 + PP_1714 0.27 -0.4
1,915,064 + PP_1714 0.32 +1.0
1,915,204 + PP_1714 0.51 -1.3
1,915,205 - PP_1714 0.51 -0.9
1,915,268 - PP_1714 0.59 -0.1
1,915,399 + PP_1714 0.77 +0.1
1,915,399 + PP_1714 0.77 -0.5
1,915,429 + PP_1714 0.81 +0.7

Or see this region's nucleotide sequence