Strain Fitness in Pseudomonas putida KT2440 around PP_1536

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1533 and PP_1534 are separated by 33 nucleotidesPP_1534 and PP_1535 are separated by 56 nucleotidesPP_1535 and PP_1536 are separated by 14 nucleotidesPP_1536 and PP_1537 overlap by 4 nucleotidesPP_1537 and PP_5472 overlap by 4 nucleotidesPP_5472 and PP_1538 overlap by 4 nucleotides PP_1533: PP_1533 - putative Excisionase, at 1,739,173 to 1,739,415 _1533 PP_1534: PP_1534 - conserved protein of unknown function, at 1,739,449 to 1,739,766 _1534 PP_1535: PP_1535 - putative Methyltransferase, at 1,739,823 to 1,740,287 _1535 PP_1536: PP_1536 - conserved protein of unknown function, at 1,740,302 to 1,740,685 _1536 PP_1537: PP_1537 - conserved protein of unknown function, at 1,740,682 to 1,740,909 _1537 PP_5472: PP_5472 - conserved exported protein of unknown function, at 1,740,906 to 1,741,163 _5472 PP_1538: PP_1538 - conserved protein of unknown function, at 1,741,160 to 1,741,912 _1538 Position (kb) 1740 1741Strain fitness (log2 ratio) -2 -1 0 1 2at 1739.305 kb on + strand, within PP_1533at 1739.458 kb on - strandat 1739.464 kb on + strandat 1739.464 kb on + strandat 1739.465 kb on - strandat 1739.558 kb on + strand, within PP_1534at 1739.558 kb on + strand, within PP_1534at 1739.656 kb on + strand, within PP_1534at 1739.656 kb on + strand, within PP_1534at 1739.656 kb on + strand, within PP_1534at 1739.672 kb on + strand, within PP_1534at 1739.672 kb on + strand, within PP_1534at 1739.672 kb on + strand, within PP_1534at 1739.772 kb on + strandat 1739.772 kb on + strandat 1739.772 kb on + strandat 1739.772 kb on + strandat 1739.772 kb on + strandat 1739.773 kb on - strandat 1739.811 kb on + strandat 1739.931 kb on + strand, within PP_1535at 1739.931 kb on + strand, within PP_1535at 1739.931 kb on + strand, within PP_1535at 1739.932 kb on - strand, within PP_1535at 1739.932 kb on - strand, within PP_1535at 1739.932 kb on - strand, within PP_1535at 1740.046 kb on + strand, within PP_1535at 1740.447 kb on + strand, within PP_1536at 1740.476 kb on + strand, within PP_1536at 1740.517 kb on - strand, within PP_1536at 1740.600 kb on - strand, within PP_1536at 1740.665 kb on + strandat 1740.734 kb on + strand, within PP_1537at 1740.734 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.800 kb on - strand, within PP_1537at 1740.800 kb on - strand, within PP_1537at 1740.801 kb on + strand, within PP_1537at 1740.802 kb on - strand, within PP_1537at 1740.840 kb on + strand, within PP_1537at 1740.849 kb on + strand, within PP_1537at 1740.873 kb on - strand, within PP_1537at 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.917 kb on - strandat 1740.917 kb on - strandat 1740.917 kb on - strandat 1740.917 kb on - strandat 1740.957 kb on - strand, within PP_5472at 1740.957 kb on - strand, within PP_5472at 1741.050 kb on + strand, within PP_5472at 1741.050 kb on + strand, within PP_5472at 1741.050 kb on + strand, within PP_5472at 1741.051 kb on - strand, within PP_5472at 1741.051 kb on - strand, within PP_5472at 1741.051 kb on - strand, within PP_5472at 1741.054 kb on + strand, within PP_5472at 1741.054 kb on + strand, within PP_5472at 1741.055 kb on - strand, within PP_5472at 1741.055 kb on - strand, within PP_5472at 1741.063 kb on - strand, within PP_5472at 1741.308 kb on + strand, within PP_1538at 1741.308 kb on + strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.311 kb on + strand, within PP_1538at 1741.311 kb on + strand, within PP_1538at 1741.312 kb on - strand, within PP_1538at 1741.312 kb on - strand, within PP_1538at 1741.343 kb on + strand, within PP_1538at 1741.540 kb on - strand, within PP_1538at 1741.560 kb on + strand, within PP_1538at 1741.561 kb on - strand, within PP_1538at 1741.624 kb on + strand, within PP_1538

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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1,739,305 + PP_1533 0.54 +0.7
1,739,458 - -0.7
1,739,464 + -0.0
1,739,464 + -1.4
1,739,465 - -0.1
1,739,558 + PP_1534 0.34 +0.2
1,739,558 + PP_1534 0.34 -1.0
1,739,656 + PP_1534 0.65 -1.0
1,739,656 + PP_1534 0.65 +0.3
1,739,656 + PP_1534 0.65 -1.2
1,739,672 + PP_1534 0.70 +0.2
1,739,672 + PP_1534 0.70 -0.4
1,739,672 + PP_1534 0.70 +1.2
1,739,772 + +0.5
1,739,772 + -1.9
1,739,772 + -0.4
1,739,772 + -1.5
1,739,772 + +0.2
1,739,773 - -0.8
1,739,811 + -0.2
1,739,931 + PP_1535 0.23 -0.3
1,739,931 + PP_1535 0.23 +0.5
1,739,931 + PP_1535 0.23 +0.2
1,739,932 - PP_1535 0.23 +0.5
1,739,932 - PP_1535 0.23 +0.8
1,739,932 - PP_1535 0.23 +0.2
1,740,046 + PP_1535 0.48 -0.6
1,740,447 + PP_1536 0.38 -0.2
1,740,476 + PP_1536 0.45 +1.1
1,740,517 - PP_1536 0.56 +0.8
1,740,600 - PP_1536 0.78 +0.1
1,740,665 + -0.3
1,740,734 + PP_1537 0.23 +0.7
1,740,734 + PP_1537 0.23 -0.4
1,740,799 + PP_1537 0.51 -0.0
1,740,799 + PP_1537 0.51 -2.7
1,740,799 + PP_1537 0.51 +0.8
1,740,799 + PP_1537 0.51 +0.2
1,740,799 + PP_1537 0.51 -1.3
1,740,800 - PP_1537 0.52 -0.5
1,740,800 - PP_1537 0.52 +1.0
1,740,801 + PP_1537 0.52 -0.5
1,740,802 - PP_1537 0.53 +0.2
1,740,840 + PP_1537 0.69 -0.2
1,740,849 + PP_1537 0.73 -0.1
1,740,873 - PP_1537 0.84 -0.1
1,740,916 + +0.2
1,740,916 + -0.9
1,740,916 + +0.7
1,740,916 + +0.5
1,740,916 + +0.4
1,740,916 + +0.8
1,740,917 - +0.6
1,740,917 - -0.4
1,740,917 - -0.0
1,740,917 - -0.4
1,740,957 - PP_5472 0.20 -1.9
1,740,957 - PP_5472 0.20 -1.3
1,741,050 + PP_5472 0.56 +1.0
1,741,050 + PP_5472 0.56 -0.0
1,741,050 + PP_5472 0.56 +0.4
1,741,051 - PP_5472 0.56 +0.7
1,741,051 - PP_5472 0.56 +1.6
1,741,051 - PP_5472 0.56 +2.3
1,741,054 + PP_5472 0.57 +0.7
1,741,054 + PP_5472 0.57 +0.3
1,741,055 - PP_5472 0.58 -0.2
1,741,055 - PP_5472 0.58 +0.6
1,741,063 - PP_5472 0.61 +0.1
1,741,308 + PP_1538 0.20 +0.8
1,741,308 + PP_1538 0.20 +0.3
1,741,309 - PP_1538 0.20 +0.1
1,741,309 - PP_1538 0.20 +0.9
1,741,309 - PP_1538 0.20 -0.2
1,741,309 - PP_1538 0.20 +0.9
1,741,311 + PP_1538 0.20 +0.4
1,741,311 + PP_1538 0.20 +0.3
1,741,312 - PP_1538 0.20 +0.4
1,741,312 - PP_1538 0.20 +0.1
1,741,343 + PP_1538 0.24 +0.6
1,741,540 - PP_1538 0.50 +2.0
1,741,560 + PP_1538 0.53 -0.2
1,741,561 - PP_1538 0.53 -0.6
1,741,624 + PP_1538 0.62 -0.7

Or see this region's nucleotide sequence