Strain Fitness in Pseudomonas putida KT2440 around PP_1415

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1414 and PP_1415 are separated by 90 nucleotidesPP_1415 and PP_1416 overlap by 8 nucleotides PP_1414: PP_1414 - 5'-nucleotidase - 2',3'-cyclic phosphodiesterase, at 1,612,923 to 1,614,605 _1414 PP_1415: PP_1415 - putative membrane associated enzyme subunit, at 1,614,696 to 1,615,751 _1415 PP_1416: PP_1416 - putative Tricarboxylate transport protein TctA, at 1,615,744 to 1,617,258 _1416 Position (kb) 1614 1615 1616Strain fitness (log2 ratio) -2 -1 0 1at 1613.743 kb on + strand, within PP_1414at 1613.743 kb on + strand, within PP_1414at 1613.743 kb on + strand, within PP_1414at 1613.743 kb on + strand, within PP_1414at 1613.744 kb on - strand, within PP_1414at 1613.744 kb on - strand, within PP_1414at 1613.778 kb on + strand, within PP_1414at 1613.778 kb on + strand, within PP_1414at 1613.779 kb on - strand, within PP_1414at 1613.823 kb on + strand, within PP_1414at 1613.823 kb on + strand, within PP_1414at 1613.824 kb on - strand, within PP_1414at 1613.824 kb on - strand, within PP_1414at 1613.824 kb on - strand, within PP_1414at 1613.824 kb on - strand, within PP_1414at 1613.824 kb on - strand, within PP_1414at 1613.824 kb on - strand, within PP_1414at 1614.028 kb on - strand, within PP_1414at 1614.043 kb on - strand, within PP_1414at 1614.043 kb on - strand, within PP_1414at 1614.043 kb on - strand, within PP_1414at 1614.059 kb on - strand, within PP_1414at 1614.084 kb on - strand, within PP_1414at 1614.108 kb on + strand, within PP_1414at 1614.109 kb on - strand, within PP_1414at 1614.109 kb on - strand, within PP_1414at 1614.112 kb on + strand, within PP_1414at 1614.112 kb on + strand, within PP_1414at 1614.112 kb on + strand, within PP_1414at 1614.112 kb on + strand, within PP_1414at 1614.113 kb on - strand, within PP_1414at 1614.113 kb on - strand, within PP_1414at 1614.113 kb on - strand, within PP_1414at 1614.113 kb on - strand, within PP_1414at 1614.113 kb on - strand, within PP_1414at 1614.134 kb on - strand, within PP_1414at 1614.445 kb on + strandat 1614.469 kb on + strandat 1614.569 kb on + strandat 1614.570 kb on - strandat 1614.570 kb on - strandat 1614.580 kb on + strandat 1614.580 kb on + strandat 1614.581 kb on - strandat 1614.609 kb on + strandat 1614.668 kb on - strandat 1614.668 kb on - strandat 1614.668 kb on - strandat 1614.668 kb on - strandat 1614.693 kb on + strandat 1614.693 kb on + strandat 1614.693 kb on + strandat 1614.693 kb on + strandat 1614.697 kb on + strandat 1614.697 kb on + strandat 1614.697 kb on + strandat 1614.698 kb on - strandat 1614.698 kb on - strandat 1614.698 kb on - strandat 1614.701 kb on + strandat 1614.701 kb on + strandat 1614.702 kb on - strandat 1614.702 kb on - strandat 1615.443 kb on + strand, within PP_1415at 1615.443 kb on + strand, within PP_1415at 1615.443 kb on + strandat 1615.443 kb on + strand, within PP_1415at 1615.444 kb on - strand, within PP_1415at 1615.817 kb on - strandat 1615.822 kb on + strandat 1615.982 kb on + strand, within PP_1416at 1615.983 kb on - strand, within PP_1416at 1616.025 kb on + strand, within PP_1416at 1616.026 kb on - strand, within PP_1416at 1616.143 kb on + strand, within PP_1416at 1616.144 kb on - strand, within PP_1416at 1616.144 kb on - strand, within PP_1416at 1616.144 kb on - strand, within PP_1416at 1616.193 kb on + strandat 1616.193 kb on + strand, within PP_1416at 1616.193 kb on + strand, within PP_1416at 1616.193 kb on + strand, within PP_1416at 1616.194 kb on - strand, within PP_1416at 1616.238 kb on - strand, within PP_1416at 1616.417 kb on + strand, within PP_1416at 1616.417 kb on + strand, within PP_1416at 1616.418 kb on - strand, within PP_1416at 1616.538 kb on + strand, within PP_1416at 1616.538 kb on + strand, within PP_1416

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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1,613,743 + PP_1414 0.49 +1.1
1,613,743 + PP_1414 0.49 -0.2
1,613,743 + PP_1414 0.49 -0.5
1,613,743 + PP_1414 0.49 -0.7
1,613,744 - PP_1414 0.49 +0.8
1,613,744 - PP_1414 0.49 +1.7
1,613,778 + PP_1414 0.51 -1.6
1,613,778 + PP_1414 0.51 +0.0
1,613,779 - PP_1414 0.51 +0.3
1,613,823 + PP_1414 0.53 -1.6
1,613,823 + PP_1414 0.53 +0.6
1,613,824 - PP_1414 0.54 -0.2
1,613,824 - PP_1414 0.54 -0.6
1,613,824 - PP_1414 0.54 -0.8
1,613,824 - PP_1414 0.54 +0.0
1,613,824 - PP_1414 0.54 +0.6
1,613,824 - PP_1414 0.54 +0.4
1,614,028 - PP_1414 0.66 -0.5
1,614,043 - PP_1414 0.67 -0.3
1,614,043 - PP_1414 0.67 -1.3
1,614,043 - PP_1414 0.67 -0.1
1,614,059 - PP_1414 0.67 +0.6
1,614,084 - PP_1414 0.69 +0.4
1,614,108 + PP_1414 0.70 -0.1
1,614,109 - PP_1414 0.70 -1.3
1,614,109 - PP_1414 0.70 +0.3
1,614,112 + PP_1414 0.71 -0.6
1,614,112 + PP_1414 0.71 -0.4
1,614,112 + PP_1414 0.71 +1.5
1,614,112 + PP_1414 0.71 +0.8
1,614,113 - PP_1414 0.71 +0.0
1,614,113 - PP_1414 0.71 +0.1
1,614,113 - PP_1414 0.71 -2.3
1,614,113 - PP_1414 0.71 -0.7
1,614,113 - PP_1414 0.71 +0.2
1,614,134 - PP_1414 0.72 +0.4
1,614,445 + -0.2
1,614,469 + -0.1
1,614,569 + -0.7
1,614,570 - +0.2
1,614,570 - -1.3
1,614,580 + +0.6
1,614,580 + +0.8
1,614,581 - -1.9
1,614,609 + +0.4
1,614,668 - +0.5
1,614,668 - +0.5
1,614,668 - -1.0
1,614,668 - -1.5
1,614,693 + -1.3
1,614,693 + -0.5
1,614,693 + +1.3
1,614,693 + +0.2
1,614,697 + +0.2
1,614,697 + -0.4
1,614,697 + -0.0
1,614,698 - +1.5
1,614,698 - +0.2
1,614,698 - -0.4
1,614,701 + +1.4
1,614,701 + +1.0
1,614,702 - +0.3
1,614,702 - +0.2
1,615,443 + PP_1415 0.71 +0.7
1,615,443 + PP_1415 0.71 +0.6
1,615,443 + +0.9
1,615,443 + PP_1415 0.71 +0.2
1,615,444 - PP_1415 0.71 +0.4
1,615,817 - -0.3
1,615,822 + -0.5
1,615,982 + PP_1416 0.16 -0.2
1,615,983 - PP_1416 0.16 +0.0
1,616,025 + PP_1416 0.19 -1.1
1,616,026 - PP_1416 0.19 +0.3
1,616,143 + PP_1416 0.26 +0.9
1,616,144 - PP_1416 0.26 -0.8
1,616,144 - PP_1416 0.26 +1.0
1,616,144 - PP_1416 0.26 -0.7
1,616,193 + -0.8
1,616,193 + PP_1416 0.30 -0.3
1,616,193 + PP_1416 0.30 +0.6
1,616,193 + PP_1416 0.30 +0.0
1,616,194 - PP_1416 0.30 -0.4
1,616,238 - PP_1416 0.33 +0.6
1,616,417 + PP_1416 0.44 +0.6
1,616,417 + PP_1416 0.44 +0.6
1,616,418 - PP_1416 0.44 +0.6
1,616,538 + PP_1416 0.52 -0.1
1,616,538 + PP_1416 0.52 +0.3

Or see this region's nucleotide sequence