Strain Fitness in Pseudomonas putida KT2440 around PP_1368

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1367 and PP_5468 are separated by 92 nucleotidesPP_5468 and PP_1368 overlap by 95 nucleotidesPP_1368 and PP_1369 overlap by 4 nucleotidesPP_1369 and PP_1370 are separated by 25 nucleotides PP_1367: PP_1367 - formyltetrahydrofolate hydrolase, at 1,556,097 to 1,556,948 _1367 PP_5468: PP_5468 - conserved protein of unknown function, at 1,557,041 to 1,557,274 _5468 PP_1368: PP_1368 - putative membrane protein containing a glycosyltransferase domain, at 1,557,180 to 1,558,172 _1368 PP_1369: PP_1369 - conserved protein of unknown function, at 1,558,169 to 1,558,900 _1369 PP_1370: PP_1370 - Glycosyl transferase, group 1 family protein, at 1,558,926 to 1,560,047 _1370 Position (kb) 1557 1558 1559Strain fitness (log2 ratio) -2 -1 0 1at 1556.365 kb on + strand, within PP_1367at 1556.366 kb on - strand, within PP_1367at 1556.366 kb on - strand, within PP_1367at 1556.516 kb on - strand, within PP_1367at 1556.516 kb on - strand, within PP_1367at 1556.607 kb on + strand, within PP_1367at 1556.607 kb on + strand, within PP_1367at 1556.607 kb on + strand, within PP_1367at 1556.607 kb on + strand, within PP_1367at 1556.608 kb on - strand, within PP_1367at 1556.643 kb on + strand, within PP_1367at 1556.643 kb on + strand, within PP_1367at 1556.644 kb on - strand, within PP_1367at 1556.706 kb on + strand, within PP_1367at 1556.707 kb on - strand, within PP_1367at 1556.757 kb on + strand, within PP_1367at 1556.758 kb on - strand, within PP_1367at 1556.758 kb on - strand, within PP_1367at 1556.924 kb on + strandat 1556.925 kb on - strandat 1556.925 kb on - strandat 1557.259 kb on + strandat 1557.265 kb on + strandat 1557.265 kb on + strandat 1557.265 kb on + strandat 1557.266 kb on - strandat 1557.268 kb on + strandat 1557.269 kb on - strandat 1557.269 kb on - strandat 1557.273 kb on - strandat 1557.285 kb on + strand, within PP_1368at 1557.444 kb on + strand, within PP_1368at 1557.469 kb on + strand, within PP_1368at 1557.469 kb on + strand, within PP_1368at 1557.470 kb on - strand, within PP_1368at 1557.470 kb on - strand, within PP_1368at 1557.470 kb on - strand, within PP_1368at 1557.482 kb on - strand, within PP_1368at 1557.711 kb on + strand, within PP_1368at 1558.047 kb on + strand, within PP_1368at 1558.047 kb on + strand, within PP_1368at 1558.048 kb on - strand, within PP_1368at 1558.050 kb on + strand, within PP_1368at 1558.051 kb on - strand, within PP_1368at 1558.258 kb on - strand, within PP_1369at 1558.286 kb on + strand, within PP_1369at 1558.287 kb on - strand, within PP_1369at 1558.454 kb on - strand, within PP_1369at 1558.454 kb on - strand, within PP_1369at 1558.454 kb on - strand, within PP_1369at 1558.454 kb on - strand, within PP_1369at 1558.611 kb on + strand, within PP_1369at 1558.632 kb on + strand, within PP_1369at 1558.632 kb on + strand, within PP_1369at 1558.633 kb on - strand, within PP_1369at 1558.633 kb on - strand, within PP_1369at 1558.650 kb on + strand, within PP_1369at 1558.695 kb on + strand, within PP_1369at 1558.695 kb on + strand, within PP_1369at 1558.695 kb on + strand, within PP_1369at 1558.844 kb on + strandat 1558.858 kb on - strandat 1558.993 kb on - strandat 1559.001 kb on - strandat 1559.011 kb on + strandat 1559.011 kb on + strandat 1559.011 kb on + strandat 1559.011 kb on + strandat 1559.012 kb on - strandat 1559.012 kb on - strandat 1559.012 kb on - strandat 1559.022 kb on + strandat 1559.022 kb on + strandat 1559.022 kb on + strandat 1559.022 kb on + strandat 1559.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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1,556,365 + PP_1367 0.31 -0.4
1,556,366 - PP_1367 0.32 +0.0
1,556,366 - PP_1367 0.32 +0.9
1,556,516 - PP_1367 0.49 -0.6
1,556,516 - PP_1367 0.49 +1.6
1,556,607 + PP_1367 0.60 +1.1
1,556,607 + PP_1367 0.60 +0.4
1,556,607 + PP_1367 0.60 +0.5
1,556,607 + PP_1367 0.60 +0.3
1,556,608 - PP_1367 0.60 +0.6
1,556,643 + PP_1367 0.64 -0.0
1,556,643 + PP_1367 0.64 +0.3
1,556,644 - PP_1367 0.64 -0.3
1,556,706 + PP_1367 0.71 +1.3
1,556,707 - PP_1367 0.72 +0.0
1,556,757 + PP_1367 0.77 -0.3
1,556,758 - PP_1367 0.78 -1.2
1,556,758 - PP_1367 0.78 +0.1
1,556,924 + -2.0
1,556,925 - -1.5
1,556,925 - +1.2
1,557,259 + +0.4
1,557,265 + +0.1
1,557,265 + -0.8
1,557,265 + -0.5
1,557,266 - +0.1
1,557,268 + +0.2
1,557,269 - +0.4
1,557,269 - +1.3
1,557,273 - +0.4
1,557,285 + PP_1368 0.11 +1.5
1,557,444 + PP_1368 0.27 -0.5
1,557,469 + PP_1368 0.29 +0.7
1,557,469 + PP_1368 0.29 +1.4
1,557,470 - PP_1368 0.29 +0.7
1,557,470 - PP_1368 0.29 -2.6
1,557,470 - PP_1368 0.29 -1.5
1,557,482 - PP_1368 0.30 +1.6
1,557,711 + PP_1368 0.53 +0.8
1,558,047 + PP_1368 0.87 +0.3
1,558,047 + PP_1368 0.87 -1.3
1,558,048 - PP_1368 0.87 -1.2
1,558,050 + PP_1368 0.88 +0.7
1,558,051 - PP_1368 0.88 +0.0
1,558,258 - PP_1369 0.12 +0.3
1,558,286 + PP_1369 0.16 -0.0
1,558,287 - PP_1369 0.16 -1.1
1,558,454 - PP_1369 0.39 +0.3
1,558,454 - PP_1369 0.39 -0.8
1,558,454 - PP_1369 0.39 -0.0
1,558,454 - PP_1369 0.39 -0.3
1,558,611 + PP_1369 0.60 +0.9
1,558,632 + PP_1369 0.63 -0.0
1,558,632 + PP_1369 0.63 +1.0
1,558,633 - PP_1369 0.63 +1.1
1,558,633 - PP_1369 0.63 +1.5
1,558,650 + PP_1369 0.66 -1.0
1,558,695 + PP_1369 0.72 -0.1
1,558,695 + PP_1369 0.72 -0.8
1,558,695 + PP_1369 0.72 +1.1
1,558,844 + -0.5
1,558,858 - -0.1
1,558,993 - -0.4
1,559,001 - -0.0
1,559,011 + -0.6
1,559,011 + -1.0
1,559,011 + +0.4
1,559,011 + -0.7
1,559,012 - -0.1
1,559,012 - -0.1
1,559,012 - +1.5
1,559,022 + +0.0
1,559,022 + -0.6
1,559,022 + +0.0
1,559,022 + -1.7
1,559,023 - +1.5

Or see this region's nucleotide sequence