Strain Fitness in Pseudomonas putida KT2440 around PP_1364

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1362 and PP_1363 are separated by 138 nucleotidesPP_1363 and PP_1364 are separated by 9 nucleotidesPP_1364 and PP_1365 are separated by 57 nucleotides PP_1362: PP_1362 - pyruvate kinase II, at 1,551,367 to 1,552,821 _1362 PP_1363: PP_1363 - conserved protein of unknown function, at 1,552,960 to 1,553,388 _1363 PP_1364: PP_1364 - conserved exported protein of unknown function, at 1,553,398 to 1,553,871 _1364 PP_1365: PP_1365 - exodeoxyribonuclease I, at 1,553,929 to 1,555,362 _1365 Position (kb) 1553 1554Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1552.488 kb on - strand, within PP_1362at 1552.833 kb on + strandat 1552.833 kb on + strandat 1552.833 kb on + strandat 1552.833 kb on + strandat 1552.834 kb on - strandat 1552.834 kb on - strandat 1552.834 kb on - strandat 1552.834 kb on - strandat 1552.835 kb on + strandat 1552.835 kb on + strandat 1552.856 kb on + strandat 1552.874 kb on + strandat 1552.895 kb on - strandat 1552.977 kb on + strandat 1552.978 kb on - strandat 1553.086 kb on + strand, within PP_1363at 1553.095 kb on + strand, within PP_1363at 1553.095 kb on + strand, within PP_1363at 1553.224 kb on + strand, within PP_1363at 1553.224 kb on + strand, within PP_1363at 1553.225 kb on - strand, within PP_1363at 1553.225 kb on - strand, within PP_1363at 1553.245 kb on + strand, within PP_1363at 1553.245 kb on + strand, within PP_1363at 1553.245 kb on + strand, within PP_1363at 1553.246 kb on - strand, within PP_1363at 1553.246 kb on - strand, within PP_1363at 1553.251 kb on + strand, within PP_1363at 1553.251 kb on + strand, within PP_1363at 1553.251 kb on + strand, within PP_1363at 1553.251 kb on + strand, within PP_1363at 1553.281 kb on + strand, within PP_1363at 1553.282 kb on - strand, within PP_1363at 1553.282 kb on - strand, within PP_1363at 1553.282 kb on - strand, within PP_1363at 1553.282 kb on - strand, within PP_1363at 1553.443 kb on - strandat 1553.443 kb on - strandat 1553.470 kb on - strand, within PP_1364at 1553.470 kb on - strand, within PP_1364at 1553.476 kb on + strand, within PP_1364at 1553.477 kb on - strand, within PP_1364at 1553.477 kb on - strand, within PP_1364at 1553.499 kb on + strand, within PP_1364at 1553.500 kb on - strand, within PP_1364at 1553.546 kb on + strand, within PP_1364at 1553.546 kb on + strand, within PP_1364at 1553.546 kb on + strand, within PP_1364at 1553.547 kb on - strand, within PP_1364at 1553.547 kb on - strand, within PP_1364at 1553.547 kb on - strand, within PP_1364at 1553.547 kb on - strand, within PP_1364at 1553.547 kb on - strand, within PP_1364at 1553.547 kb on - strand, within PP_1364at 1553.547 kb on - strand, within PP_1364at 1553.547 kb on - strand, within PP_1364at 1553.547 kb on - strand, within PP_1364at 1553.600 kb on + strand, within PP_1364at 1553.600 kb on + strand, within PP_1364at 1553.601 kb on - strand, within PP_1364at 1553.601 kb on - strand, within PP_1364at 1553.665 kb on + strand, within PP_1364at 1553.683 kb on - strand, within PP_1364at 1553.781 kb on + strand, within PP_1364at 1553.781 kb on + strand, within PP_1364at 1553.781 kb on + strand, within PP_1364at 1553.781 kb on + strand, within PP_1364at 1553.781 kb on + strand, within PP_1364at 1553.782 kb on - strand, within PP_1364at 1553.782 kb on - strand, within PP_1364at 1553.782 kb on - strand, within PP_1364at 1553.782 kb on - strand, within PP_1364at 1553.806 kb on + strand, within PP_1364at 1553.806 kb on + strand, within PP_1364at 1553.806 kb on + strand, within PP_1364at 1553.836 kb on + strandat 1553.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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1,552,488 - PP_1362 0.77 -2.5
1,552,833 + -3.3
1,552,833 + -2.9
1,552,833 + -0.7
1,552,833 + -1.7
1,552,834 - -0.6
1,552,834 - -1.6
1,552,834 - +0.1
1,552,834 - +0.0
1,552,835 + -2.5
1,552,835 + -0.5
1,552,856 + +0.3
1,552,874 + -2.5
1,552,895 - -1.0
1,552,977 + -1.8
1,552,978 - +0.2
1,553,086 + PP_1363 0.29 -0.5
1,553,095 + PP_1363 0.31 -1.2
1,553,095 + PP_1363 0.31 -0.1
1,553,224 + PP_1363 0.62 +0.1
1,553,224 + PP_1363 0.62 -0.2
1,553,225 - PP_1363 0.62 +0.3
1,553,225 - PP_1363 0.62 +0.2
1,553,245 + PP_1363 0.66 +0.2
1,553,245 + PP_1363 0.66 +2.0
1,553,245 + PP_1363 0.66 +0.9
1,553,246 - PP_1363 0.67 +1.3
1,553,246 - PP_1363 0.67 +1.6
1,553,251 + PP_1363 0.68 -0.7
1,553,251 + PP_1363 0.68 -0.1
1,553,251 + PP_1363 0.68 +0.1
1,553,251 + PP_1363 0.68 +1.5
1,553,281 + PP_1363 0.75 -0.9
1,553,282 - PP_1363 0.75 +0.8
1,553,282 - PP_1363 0.75 +1.3
1,553,282 - PP_1363 0.75 +0.4
1,553,282 - PP_1363 0.75 +1.2
1,553,443 - -0.8
1,553,443 - +0.3
1,553,470 - PP_1364 0.15 -1.5
1,553,470 - PP_1364 0.15 +0.9
1,553,476 + PP_1364 0.16 -0.4
1,553,477 - PP_1364 0.17 +2.3
1,553,477 - PP_1364 0.17 +0.9
1,553,499 + PP_1364 0.21 +0.9
1,553,500 - PP_1364 0.22 +0.3
1,553,546 + PP_1364 0.31 -0.3
1,553,546 + PP_1364 0.31 +0.4
1,553,546 + PP_1364 0.31 +0.4
1,553,547 - PP_1364 0.31 +0.7
1,553,547 - PP_1364 0.31 -1.3
1,553,547 - PP_1364 0.31 -0.2
1,553,547 - PP_1364 0.31 -0.9
1,553,547 - PP_1364 0.31 +0.5
1,553,547 - PP_1364 0.31 -0.1
1,553,547 - PP_1364 0.31 +1.2
1,553,547 - PP_1364 0.31 +0.4
1,553,547 - PP_1364 0.31 +0.6
1,553,600 + PP_1364 0.43 +2.9
1,553,600 + PP_1364 0.43 +0.3
1,553,601 - PP_1364 0.43 +0.2
1,553,601 - PP_1364 0.43 -0.6
1,553,665 + PP_1364 0.56 +0.2
1,553,683 - PP_1364 0.60 +1.0
1,553,781 + PP_1364 0.81 -0.2
1,553,781 + PP_1364 0.81 +0.2
1,553,781 + PP_1364 0.81 -0.5
1,553,781 + PP_1364 0.81 +0.3
1,553,781 + PP_1364 0.81 -0.8
1,553,782 - PP_1364 0.81 -0.5
1,553,782 - PP_1364 0.81 +2.0
1,553,782 - PP_1364 0.81 +1.0
1,553,782 - PP_1364 0.81 +0.4
1,553,806 + PP_1364 0.86 -1.8
1,553,806 + PP_1364 0.86 +0.2
1,553,806 + PP_1364 0.86 +1.4
1,553,836 + +1.6
1,553,837 - -0.8

Or see this region's nucleotide sequence