Strain Fitness in Pseudomonas putida KT2440 around PP_5646

Experiment: Growth at pH9 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3913 and PP_5645 are separated by 49 nucleotidesPP_5645 and PP_3914 are separated by 165 nucleotidesPP_3914 and PP_5646 overlap by 4 nucleotidesPP_5646 and PP_3915 overlap by 4 nucleotidesPP_3915 and PP_3916 overlap by 4 nucleotidesPP_3916 and PP_5647 are separated by 189 nucleotides PP_3913: PP_3913 - protein of unknown function, at 4,421,921 to 4,422,598 _3913 PP_5645: PP_5645 - conserved protein of unknown function, at 4,422,648 to 4,422,947 _5645 PP_3914: PP_3914 - conserved protein of unknown function, at 4,423,113 to 4,423,496 _3914 PP_5646: PP_5646 - protein of unknown function, at 4,423,493 to 4,423,771 _5646 PP_3915: PP_3915 - conserved protein of unknown function, at 4,423,768 to 4,424,091 _3915 PP_3916: PP_3916 - conserved protein of unknown function, at 4,424,088 to 4,424,480 _3916 PP_5647: PP_5647 - conserved protein of unknown function, at 4,424,670 to 4,424,942 _5647 Position (kb) 4423 4424Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4422.529 kb on + strand, within PP_3913at 4422.529 kb on + strand, within PP_3913at 4422.529 kb on + strand, within PP_3913at 4422.529 kb on + strand, within PP_3913at 4422.634 kb on - strandat 4422.693 kb on - strand, within PP_5645at 4422.714 kb on + strand, within PP_5645at 4422.749 kb on + strand, within PP_5645at 4422.750 kb on - strand, within PP_5645at 4422.799 kb on + strand, within PP_5645at 4422.799 kb on + strand, within PP_5645at 4422.800 kb on - strand, within PP_5645at 4422.859 kb on + strand, within PP_5645at 4422.859 kb on + strand, within PP_5645at 4422.859 kb on + strand, within PP_5645at 4422.859 kb on + strand, within PP_5645at 4422.859 kb on + strand, within PP_5645at 4422.859 kb on + strand, within PP_5645at 4422.859 kb on + strandat 4422.859 kb on + strand, within PP_5645at 4422.860 kb on - strand, within PP_5645at 4422.860 kb on - strand, within PP_5645at 4422.860 kb on - strand, within PP_5645at 4422.860 kb on - strand, within PP_5645at 4422.860 kb on - strand, within PP_5645at 4422.925 kb on + strandat 4422.925 kb on + strandat 4422.925 kb on + strandat 4422.926 kb on - strandat 4422.926 kb on - strandat 4422.947 kb on + strandat 4422.947 kb on + strandat 4422.947 kb on + strandat 4422.948 kb on - strandat 4422.981 kb on + strandat 4423.024 kb on + strandat 4423.024 kb on + strandat 4423.044 kb on - strandat 4423.077 kb on + strandat 4423.078 kb on - strandat 4423.183 kb on + strand, within PP_3914at 4423.183 kb on + strand, within PP_3914at 4423.406 kb on + strand, within PP_3914at 4423.406 kb on + strand, within PP_3914at 4423.406 kb on + strand, within PP_3914at 4423.407 kb on - strand, within PP_3914at 4423.407 kb on - strand, within PP_3914at 4423.407 kb on - strand, within PP_3914at 4423.407 kb on - strand, within PP_3914at 4423.432 kb on - strand, within PP_3914at 4423.455 kb on + strand, within PP_3914at 4423.455 kb on + strand, within PP_3914at 4423.455 kb on + strand, within PP_3914at 4423.456 kb on - strand, within PP_3914at 4423.552 kb on + strand, within PP_5646at 4423.553 kb on - strand, within PP_5646at 4423.553 kb on - strand, within PP_5646at 4423.563 kb on + strand, within PP_5646at 4423.563 kb on + strand, within PP_5646at 4423.563 kb on + strand, within PP_5646at 4423.563 kb on + strand, within PP_5646at 4423.563 kb on + strand, within PP_5646at 4423.563 kb on + strand, within PP_5646at 4423.563 kb on + strand, within PP_5646at 4423.564 kb on - strand, within PP_5646at 4423.564 kb on - strand, within PP_5646at 4423.564 kb on - strand, within PP_5646at 4423.564 kb on - strand, within PP_5646at 4423.564 kb on - strand, within PP_5646at 4423.564 kb on - strand, within PP_5646at 4423.564 kb on - strand, within PP_5646at 4423.564 kb on - strand, within PP_5646at 4423.594 kb on + strand, within PP_5646at 4423.594 kb on + strand, within PP_5646at 4423.595 kb on - strand, within PP_5646at 4423.607 kb on + strand, within PP_5646at 4423.607 kb on + strand, within PP_5646at 4423.607 kb on + strand, within PP_5646at 4423.641 kb on + strand, within PP_5646at 4423.641 kb on + strand, within PP_5646at 4423.641 kb on + strand, within PP_5646at 4423.642 kb on - strand, within PP_5646at 4423.642 kb on - strand, within PP_5646at 4423.642 kb on - strand, within PP_5646at 4423.720 kb on + strand, within PP_5646at 4423.760 kb on + strandat 4423.760 kb on + strandat 4423.761 kb on - strandat 4423.761 kb on - strandat 4423.942 kb on + strand, within PP_3915at 4423.942 kb on + strand, within PP_3915at 4423.942 kb on + strand, within PP_3915at 4423.943 kb on - strand, within PP_3915at 4423.981 kb on + strand, within PP_3915at 4423.981 kb on + strand, within PP_3915at 4423.981 kb on + strand, within PP_3915at 4423.981 kb on + strand, within PP_3915at 4423.982 kb on - strand, within PP_3915at 4423.982 kb on - strand, within PP_3915at 4423.982 kb on - strand, within PP_3915at 4424.032 kb on + strand, within PP_3915at 4424.062 kb on + strandat 4424.062 kb on + strandat 4424.062 kb on + strandat 4424.062 kb on + strandat 4424.063 kb on - strandat 4424.224 kb on - strand, within PP_3916at 4424.344 kb on - strand, within PP_3916at 4424.425 kb on + strand, within PP_3916at 4424.426 kb on - strand, within PP_3916at 4424.501 kb on + strandat 4424.501 kb on + strandat 4424.501 kb on + strandat 4424.502 kb on - strandat 4424.502 kb on - strandat 4424.502 kb on - strandat 4424.502 kb on - strandat 4424.502 kb on - strandat 4424.510 kb on + strandat 4424.510 kb on + strandat 4424.511 kb on - strandat 4424.511 kb on - strandat 4424.519 kb on + strandat 4424.519 kb on + strandat 4424.520 kb on - strandat 4424.660 kb on - strandat 4424.660 kb on - strandat 4424.672 kb on - strandat 4424.735 kb on + strand, within PP_5647at 4424.735 kb on + strand, within PP_5647at 4424.735 kb on + strand, within PP_5647at 4424.736 kb on - strand, within PP_5647at 4424.758 kb on + strand, within PP_5647at 4424.759 kb on - strand, within PP_5647at 4424.759 kb on - strand, within PP_5647

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
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4,422,529 + PP_3913 0.90 -0.0
4,422,529 + PP_3913 0.90 +0.5
4,422,529 + PP_3913 0.90 +0.5
4,422,529 + PP_3913 0.90 +0.1
4,422,634 - -1.8
4,422,693 - PP_5645 0.15 -0.9
4,422,714 + PP_5645 0.22 +0.0
4,422,749 + PP_5645 0.34 +0.2
4,422,750 - PP_5645 0.34 -1.4
4,422,799 + PP_5645 0.50 -0.2
4,422,799 + PP_5645 0.50 +0.4
4,422,800 - PP_5645 0.51 +1.0
4,422,859 + PP_5645 0.70 -0.8
4,422,859 + PP_5645 0.70 -0.6
4,422,859 + PP_5645 0.70 +0.2
4,422,859 + PP_5645 0.70 +0.1
4,422,859 + PP_5645 0.70 -0.1
4,422,859 + PP_5645 0.70 +0.1
4,422,859 + -0.8
4,422,859 + PP_5645 0.70 -0.3
4,422,860 - PP_5645 0.71 +2.0
4,422,860 - PP_5645 0.71 -0.7
4,422,860 - PP_5645 0.71 +0.0
4,422,860 - PP_5645 0.71 -0.6
4,422,860 - PP_5645 0.71 -0.9
4,422,925 + -0.2
4,422,925 + -0.6
4,422,925 + +1.2
4,422,926 - +0.2
4,422,926 - -0.6
4,422,947 + -0.2
4,422,947 + +1.2
4,422,947 + +1.5
4,422,948 - +0.4
4,422,981 + -0.3
4,423,024 + +0.4
4,423,024 + -1.2
4,423,044 - +0.9
4,423,077 + +0.5
4,423,078 - -2.9
4,423,183 + PP_3914 0.18 -0.0
4,423,183 + PP_3914 0.18 +0.2
4,423,406 + PP_3914 0.76 +0.6
4,423,406 + PP_3914 0.76 -1.1
4,423,406 + PP_3914 0.76 +0.1
4,423,407 - PP_3914 0.77 +0.7
4,423,407 - PP_3914 0.77 -0.5
4,423,407 - PP_3914 0.77 -1.0
4,423,407 - PP_3914 0.77 -0.0
4,423,432 - PP_3914 0.83 -0.7
4,423,455 + PP_3914 0.89 -0.1
4,423,455 + PP_3914 0.89 -0.6
4,423,455 + PP_3914 0.89 +0.0
4,423,456 - PP_3914 0.89 -0.1
4,423,552 + PP_5646 0.21 +1.7
4,423,553 - PP_5646 0.22 +0.2
4,423,553 - PP_5646 0.22 +0.4
4,423,563 + PP_5646 0.25 +0.1
4,423,563 + PP_5646 0.25 +0.1
4,423,563 + PP_5646 0.25 +1.5
4,423,563 + PP_5646 0.25 +0.7
4,423,563 + PP_5646 0.25 +0.4
4,423,563 + PP_5646 0.25 +0.8
4,423,563 + PP_5646 0.25 +0.7
4,423,564 - PP_5646 0.25 -2.5
4,423,564 - PP_5646 0.25 +0.6
4,423,564 - PP_5646 0.25 +1.2
4,423,564 - PP_5646 0.25 +0.4
4,423,564 - PP_5646 0.25 +0.7
4,423,564 - PP_5646 0.25 +0.4
4,423,564 - PP_5646 0.25 +0.8
4,423,564 - PP_5646 0.25 -0.1
4,423,594 + PP_5646 0.36 -0.8
4,423,594 + PP_5646 0.36 +0.6
4,423,595 - PP_5646 0.37 -0.3
4,423,607 + PP_5646 0.41 +0.8
4,423,607 + PP_5646 0.41 -0.3
4,423,607 + PP_5646 0.41 +0.6
4,423,641 + PP_5646 0.53 +0.1
4,423,641 + PP_5646 0.53 +1.4
4,423,641 + PP_5646 0.53 +0.4
4,423,642 - PP_5646 0.53 +1.0
4,423,642 - PP_5646 0.53 +0.3
4,423,642 - PP_5646 0.53 +0.4
4,423,720 + PP_5646 0.81 +0.4
4,423,760 + -1.0
4,423,760 + +0.2
4,423,761 - -0.3
4,423,761 - +0.6
4,423,942 + PP_3915 0.54 -0.9
4,423,942 + PP_3915 0.54 -1.6
4,423,942 + PP_3915 0.54 +0.4
4,423,943 - PP_3915 0.54 -0.9
4,423,981 + PP_3915 0.66 +1.0
4,423,981 + PP_3915 0.66 -0.1
4,423,981 + PP_3915 0.66 -0.8
4,423,981 + PP_3915 0.66 +0.0
4,423,982 - PP_3915 0.66 +0.0
4,423,982 - PP_3915 0.66 -1.0
4,423,982 - PP_3915 0.66 -0.1
4,424,032 + PP_3915 0.81 -1.7
4,424,062 + +1.3
4,424,062 + +0.5
4,424,062 + +0.4
4,424,062 + -0.1
4,424,063 - +0.4
4,424,224 - PP_3916 0.35 +1.8
4,424,344 - PP_3916 0.65 -1.3
4,424,425 + PP_3916 0.86 +0.0
4,424,426 - PP_3916 0.86 -0.3
4,424,501 + -1.0
4,424,501 + +0.6
4,424,501 + -1.1
4,424,502 - -0.6
4,424,502 - -0.3
4,424,502 - -0.4
4,424,502 - +0.2
4,424,502 - -0.3
4,424,510 + -1.9
4,424,510 + +2.0
4,424,511 - +0.6
4,424,511 - -0.4
4,424,519 + -0.1
4,424,519 + -0.6
4,424,520 - -3.3
4,424,660 - -1.2
4,424,660 - +0.4
4,424,672 - +0.3
4,424,735 + PP_5647 0.24 +0.3
4,424,735 + PP_5647 0.24 -0.4
4,424,735 + PP_5647 0.24 +0.2
4,424,736 - PP_5647 0.24 -0.8
4,424,758 + PP_5647 0.32 -1.7
4,424,759 - PP_5647 0.33 +0.5
4,424,759 - PP_5647 0.33 -2.8

Or see this region's nucleotide sequence