Experiment: Growth at pH9 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4941 and PP_4942 overlap by 4 nucleotides PP_4942 and PP_4943 overlap by 1 nucleotides
PP_4941: PP_4941 - conserved exported protein of unknown function, at 5,622,334 to 5,623,737
_4941
PP_4942: PP_4942 - conserved protein of unknown function, at 5,623,734 to 5,624,630
_4942
PP_4943: PP_4943 - putative Glycosyl transferase, at 5,624,630 to 5,625,760
_4943
Position (kb) 5623
5624
5625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5622.736 kb on + strand, within PP_4941 at 5622.736 kb on + strand, within PP_4941 at 5622.967 kb on + strand, within PP_4941 at 5622.968 kb on - strand, within PP_4941 at 5622.968 kb on - strand, within PP_4941 at 5623.080 kb on - strand, within PP_4941 at 5623.093 kb on + strand, within PP_4941 at 5623.094 kb on - strand, within PP_4941 at 5623.142 kb on + strand, within PP_4941 at 5623.143 kb on - strand, within PP_4941 at 5623.151 kb on + strand, within PP_4941 at 5623.152 kb on - strand, within PP_4941 at 5623.152 kb on - strand, within PP_4941 at 5623.539 kb on - strand, within PP_4941 at 5623.544 kb on + strand, within PP_4941 at 5623.544 kb on + strand, within PP_4941 at 5623.544 kb on + strand, within PP_4941 at 5623.544 kb on + strand, within PP_4941 at 5623.544 kb on + strand, within PP_4941 at 5623.545 kb on - strand, within PP_4941 at 5623.545 kb on - strand, within PP_4941 at 5623.562 kb on + strand, within PP_4941 at 5623.562 kb on + strand, within PP_4941 at 5623.563 kb on - strand, within PP_4941 at 5623.563 kb on - strand, within PP_4941 at 5623.563 kb on - strand, within PP_4941 at 5623.563 kb on - strand, within PP_4941 at 5623.563 kb on - strand, within PP_4941 at 5623.563 kb on - strand, within PP_4941 at 5623.745 kb on - strand at 5623.745 kb on - strand at 5623.775 kb on + strand at 5623.775 kb on + strand at 5623.776 kb on - strand at 5623.776 kb on - strand at 5623.777 kb on + strand at 5623.777 kb on + strand at 5623.921 kb on + strand, within PP_4942 at 5624.046 kb on - strand, within PP_4942 at 5624.098 kb on + strand, within PP_4942 at 5624.098 kb on + strand, within PP_4942 at 5624.098 kb on + strand, within PP_4942 at 5624.099 kb on - strand, within PP_4942 at 5624.142 kb on + strand, within PP_4942 at 5624.585 kb on + strand at 5624.618 kb on + strand at 5624.962 kb on - strand, within PP_4943 at 5625.262 kb on - strand, within PP_4943 at 5625.457 kb on - strand, within PP_4943
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose remove 5,622,736 + PP_4941 0.29 -1.6 5,622,736 + PP_4941 0.29 +0.9 5,622,967 + PP_4941 0.45 +1.5 5,622,968 - PP_4941 0.45 +2.8 5,622,968 - PP_4941 0.45 +1.1 5,623,080 - PP_4941 0.53 +0.2 5,623,093 + PP_4941 0.54 +1.4 5,623,094 - PP_4941 0.54 -0.8 5,623,142 + PP_4941 0.58 -0.7 5,623,143 - PP_4941 0.58 +0.8 5,623,151 + PP_4941 0.58 +3.0 5,623,152 - PP_4941 0.58 -0.0 5,623,152 - PP_4941 0.58 -1.3 5,623,539 - PP_4941 0.86 +0.3 5,623,544 + PP_4941 0.86 +0.8 5,623,544 + PP_4941 0.86 -1.3 5,623,544 + PP_4941 0.86 -2.2 5,623,544 + PP_4941 0.86 -1.0 5,623,544 + PP_4941 0.86 +1.7 5,623,545 - PP_4941 0.86 +0.4 5,623,545 - PP_4941 0.86 -2.5 5,623,562 + PP_4941 0.87 -0.3 5,623,562 + PP_4941 0.87 +1.3 5,623,563 - PP_4941 0.88 -0.1 5,623,563 - PP_4941 0.88 +2.3 5,623,563 - PP_4941 0.88 +0.4 5,623,563 - PP_4941 0.88 -2.8 5,623,563 - PP_4941 0.88 -0.8 5,623,563 - PP_4941 0.88 +2.3 5,623,745 - +0.7 5,623,745 - +2.3 5,623,775 + +0.5 5,623,775 + -0.7 5,623,776 - -0.0 5,623,776 - -0.7 5,623,777 + -0.3 5,623,777 + +0.5 5,623,921 + PP_4942 0.21 -0.0 5,624,046 - PP_4942 0.35 -0.7 5,624,098 + PP_4942 0.41 +3.3 5,624,098 + PP_4942 0.41 +1.2 5,624,098 + PP_4942 0.41 -0.7 5,624,099 - PP_4942 0.41 +0.7 5,624,142 + PP_4942 0.45 +2.5 5,624,585 + -0.9 5,624,618 + +2.7 5,624,962 - PP_4943 0.29 -2.4 5,625,262 - PP_4943 0.56 -1.0 5,625,457 - PP_4943 0.73 -2.6
Or see this region's nucleotide sequence