Experiment: Growth at pH9 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4848 and PP_4849 are separated by 164 nucleotides PP_4849 and PP_4850 are separated by 51 nucleotides
PP_4848: PP_4848 - Curved DNA-binding protein, at 5,515,066 to 5,516,025
_4848
PP_4849: PP_4849 - putative DnaK protein, at 5,516,190 to 5,517,461
_4849
PP_4850: PP_4850 - conserved membrane protein of unknown function, at 5,517,513 to 5,518,580
_4850
Position (kb) 5516
5517
5518 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5515.814 kb on + strand, within PP_4848 at 5515.815 kb on - strand, within PP_4848 at 5515.868 kb on + strand, within PP_4848 at 5515.869 kb on - strand, within PP_4848 at 5515.931 kb on + strand at 5515.931 kb on + strand at 5515.932 kb on - strand at 5515.932 kb on - strand at 5515.999 kb on + strand at 5516.006 kb on + strand at 5516.006 kb on + strand at 5516.007 kb on - strand at 5516.007 kb on - strand at 5516.007 kb on - strand at 5516.007 kb on - strand at 5516.009 kb on + strand at 5516.009 kb on + strand at 5516.010 kb on - strand at 5516.028 kb on - strand at 5516.028 kb on - strand at 5516.080 kb on + strand at 5516.080 kb on + strand at 5516.080 kb on + strand at 5516.080 kb on + strand at 5516.150 kb on + strand at 5516.150 kb on + strand at 5516.150 kb on + strand at 5516.151 kb on - strand at 5516.151 kb on - strand at 5516.151 kb on - strand at 5516.151 kb on - strand at 5516.151 kb on - strand at 5516.201 kb on - strand at 5516.355 kb on + strand, within PP_4849 at 5516.355 kb on + strand, within PP_4849 at 5516.676 kb on + strand, within PP_4849 at 5516.676 kb on + strand, within PP_4849 at 5516.677 kb on - strand, within PP_4849 at 5516.677 kb on - strand, within PP_4849 at 5516.703 kb on + strand, within PP_4849 at 5516.734 kb on + strand, within PP_4849 at 5516.910 kb on + strand, within PP_4849 at 5516.911 kb on - strand, within PP_4849 at 5516.952 kb on + strand, within PP_4849 at 5516.952 kb on + strand, within PP_4849 at 5516.953 kb on - strand, within PP_4849 at 5516.953 kb on - strand, within PP_4849 at 5516.995 kb on - strand, within PP_4849 at 5516.995 kb on - strand, within PP_4849 at 5517.034 kb on - strand, within PP_4849 at 5517.305 kb on + strand, within PP_4849 at 5517.398 kb on + strand at 5517.398 kb on + strand at 5517.399 kb on - strand at 5517.506 kb on + strand at 5517.506 kb on + strand at 5517.506 kb on + strand at 5517.506 kb on + strand at 5517.507 kb on - strand at 5517.507 kb on - strand at 5517.507 kb on - strand at 5517.507 kb on - strand at 5517.550 kb on + strand at 5517.551 kb on - strand at 5517.556 kb on + strand at 5517.556 kb on + strand at 5517.556 kb on + strand at 5517.556 kb on + strand at 5517.556 kb on + strand at 5517.556 kb on + strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.606 kb on + strand at 5517.607 kb on - strand at 5517.679 kb on + strand, within PP_4850 at 5517.679 kb on + strand, within PP_4850 at 5517.849 kb on + strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5518.171 kb on + strand, within PP_4850 at 5518.171 kb on + strand, within PP_4850
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose remove 5,515,814 + PP_4848 0.78 +0.5 5,515,815 - PP_4848 0.78 -0.2 5,515,868 + PP_4848 0.84 +1.2 5,515,869 - PP_4848 0.84 -0.5 5,515,931 + +0.8 5,515,931 + -1.9 5,515,932 - +0.9 5,515,932 - +0.2 5,515,999 + -0.0 5,516,006 + +0.6 5,516,006 + +0.7 5,516,007 - +0.5 5,516,007 - -1.1 5,516,007 - +0.4 5,516,007 - +0.1 5,516,009 + +0.2 5,516,009 + -0.8 5,516,010 - -1.4 5,516,028 - +0.8 5,516,028 - -0.2 5,516,080 + +0.0 5,516,080 + +0.5 5,516,080 + -0.3 5,516,080 + +0.6 5,516,150 + -1.8 5,516,150 + -1.6 5,516,150 + +0.2 5,516,151 - +1.1 5,516,151 - -1.3 5,516,151 - +0.9 5,516,151 - +0.7 5,516,151 - +0.7 5,516,201 - -0.2 5,516,355 + PP_4849 0.13 +0.4 5,516,355 + PP_4849 0.13 +1.0 5,516,676 + PP_4849 0.38 +1.9 5,516,676 + PP_4849 0.38 +1.4 5,516,677 - PP_4849 0.38 +0.2 5,516,677 - PP_4849 0.38 +0.1 5,516,703 + PP_4849 0.40 +1.9 5,516,734 + PP_4849 0.43 +0.0 5,516,910 + PP_4849 0.57 +0.6 5,516,911 - PP_4849 0.57 +0.3 5,516,952 + PP_4849 0.60 +0.4 5,516,952 + PP_4849 0.60 +0.6 5,516,953 - PP_4849 0.60 +1.0 5,516,953 - PP_4849 0.60 -1.2 5,516,995 - PP_4849 0.63 +0.0 5,516,995 - PP_4849 0.63 -0.5 5,517,034 - PP_4849 0.66 +1.5 5,517,305 + PP_4849 0.88 +1.2 5,517,398 + -1.4 5,517,398 + -0.8 5,517,399 - -0.4 5,517,506 + +0.7 5,517,506 + -0.8 5,517,506 + -0.8 5,517,506 + +0.3 5,517,507 - +0.3 5,517,507 - -2.2 5,517,507 - -0.1 5,517,507 - -0.1 5,517,550 + +0.7 5,517,551 - -1.6 5,517,556 + -0.0 5,517,556 + -0.2 5,517,556 + -0.3 5,517,556 + -1.1 5,517,556 + +0.8 5,517,556 + +0.5 5,517,557 - -0.3 5,517,557 - +0.3 5,517,557 - -0.1 5,517,557 - +1.3 5,517,557 - +0.4 5,517,557 - +1.3 5,517,557 - +1.9 5,517,557 - +0.4 5,517,557 - +0.7 5,517,557 - +0.1 5,517,559 + +1.8 5,517,559 + -1.2 5,517,559 + +1.0 5,517,559 + -0.4 5,517,559 + +0.1 5,517,559 + +0.6 5,517,559 + -0.6 5,517,559 + -0.4 5,517,559 + +0.1 5,517,560 - -1.8 5,517,560 - +0.9 5,517,560 - -0.6 5,517,560 - +2.8 5,517,560 - +0.6 5,517,560 - +0.2 5,517,560 - -1.4 5,517,560 - -0.3 5,517,606 + +0.7 5,517,607 - -0.7 5,517,679 + PP_4850 0.16 +1.2 5,517,679 + PP_4850 0.16 -0.4 5,517,849 + PP_4850 0.31 +0.8 5,517,850 - PP_4850 0.32 +0.6 5,517,850 - PP_4850 0.32 -0.3 5,517,850 - PP_4850 0.32 +0.0 5,518,171 + PP_4850 0.62 -0.4 5,518,171 + PP_4850 0.62 +0.1
Or see this region's nucleotide sequence