Strain Fitness in Pseudomonas putida KT2440 around PP_4361

Experiment: Growth at pH9 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4358 and PP_4359 are separated by 9 nucleotidesPP_4359 and PP_4361 are separated by 156 nucleotidesPP_4361 and PP_4362 are separated by 71 nucleotidesPP_4362 and PP_4363 are separated by 57 nucleotides PP_4358: PP_4358 - flagellar synthesis, switching and energizing component, at 4,949,375 to 4,950,343 _4358 PP_4359: PP_4359 - Flagellar protein FliL, at 4,950,353 to 4,950,850 _4359 PP_4361: PP_4361 - Flagellar hook-length control protein FliK, at 4,951,007 to 4,952,272 _4361 PP_4362: PP_4362 - conserved protein of unknown function, at 4,952,344 to 4,952,682 _4362 PP_4363: PP_4363 - Sensor histidine kinase/response regulator, at 4,952,740 to 4,954,431 _4363 Position (kb) 4951 4952 4953Strain fitness (log2 ratio) -3 -2 -1 0 1at 4950.055 kb on - strand, within PP_4358at 4950.055 kb on - strand, within PP_4358at 4950.055 kb on - strand, within PP_4358at 4950.069 kb on + strand, within PP_4358at 4950.069 kb on + strand, within PP_4358at 4950.069 kb on + strand, within PP_4358at 4950.070 kb on - strand, within PP_4358at 4950.151 kb on + strand, within PP_4358at 4950.152 kb on - strand, within PP_4358at 4950.153 kb on + strand, within PP_4358at 4950.154 kb on - strand, within PP_4358at 4950.208 kb on + strand, within PP_4358at 4950.335 kb on + strandat 4950.337 kb on - strandat 4950.354 kb on + strandat 4950.354 kb on + strandat 4950.355 kb on - strandat 4950.355 kb on - strandat 4950.355 kb on - strandat 4950.355 kb on - strandat 4950.362 kb on + strandat 4950.584 kb on + strand, within PP_4359at 4950.584 kb on + strand, within PP_4359at 4950.584 kb on + strand, within PP_4359at 4950.585 kb on - strand, within PP_4359at 4950.585 kb on - strand, within PP_4359at 4950.585 kb on - strand, within PP_4359at 4950.592 kb on + strand, within PP_4359at 4950.592 kb on + strand, within PP_4359at 4950.606 kb on + strand, within PP_4359at 4950.606 kb on + strand, within PP_4359at 4950.607 kb on - strand, within PP_4359at 4950.663 kb on + strand, within PP_4359at 4950.663 kb on + strand, within PP_4359at 4950.663 kb on + strand, within PP_4359at 4950.663 kb on + strand, within PP_4359at 4950.663 kb on + strand, within PP_4359at 4950.663 kb on + strand, within PP_4359at 4950.664 kb on - strand, within PP_4359at 4950.664 kb on - strand, within PP_4359at 4950.664 kb on - strand, within PP_4359at 4950.664 kb on - strand, within PP_4359at 4950.665 kb on + strand, within PP_4359at 4950.743 kb on - strand, within PP_4359at 4950.814 kb on + strandat 4950.856 kb on + strandat 4950.857 kb on - strandat 4950.857 kb on - strandat 4950.911 kb on - strandat 4951.006 kb on - strandat 4951.006 kb on - strandat 4951.014 kb on + strandat 4951.014 kb on + strandat 4951.014 kb on + strandat 4951.014 kb on + strandat 4951.014 kb on + strandat 4951.015 kb on - strandat 4951.015 kb on - strandat 4951.015 kb on - strandat 4951.392 kb on + strand, within PP_4361at 4951.392 kb on + strand, within PP_4361at 4951.392 kb on + strand, within PP_4361at 4951.392 kb on + strand, within PP_4361at 4951.393 kb on - strand, within PP_4361at 4951.393 kb on - strand, within PP_4361at 4951.393 kb on - strand, within PP_4361at 4951.640 kb on - strand, within PP_4361at 4951.663 kb on + strand, within PP_4361at 4951.663 kb on + strand, within PP_4361at 4951.664 kb on - strand, within PP_4361at 4952.358 kb on + strandat 4952.378 kb on + strandat 4952.439 kb on - strand, within PP_4362at 4952.627 kb on + strand, within PP_4362at 4952.627 kb on + strand, within PP_4362at 4952.628 kb on - strand, within PP_4362at 4952.628 kb on - strand, within PP_4362at 4952.628 kb on - strand, within PP_4362at 4952.662 kb on + strandat 4952.663 kb on - strandat 4952.676 kb on + strandat 4952.676 kb on + strandat 4952.676 kb on + strandat 4952.676 kb on + strandat 4952.677 kb on - strandat 4952.677 kb on - strandat 4952.677 kb on - strandat 4952.718 kb on + strandat 4952.746 kb on + strandat 4952.746 kb on + strandat 4952.746 kb on + strandat 4952.956 kb on + strand, within PP_4363at 4952.956 kb on + strandat 4952.956 kb on + strand, within PP_4363at 4952.957 kb on - strand, within PP_4363at 4952.957 kb on - strand, within PP_4363at 4952.957 kb on - strand, within PP_4363at 4953.002 kb on + strand, within PP_4363at 4953.005 kb on + strand, within PP_4363at 4953.005 kb on + strand, within PP_4363at 4953.080 kb on + strand, within PP_4363at 4953.081 kb on - strand, within PP_4363at 4953.081 kb on - strand, within PP_4363at 4953.081 kb on - strand, within PP_4363at 4953.081 kb on - strand, within PP_4363at 4953.114 kb on + strand, within PP_4363at 4953.115 kb on - strand, within PP_4363at 4953.159 kb on - strand, within PP_4363at 4953.240 kb on + strand, within PP_4363at 4953.240 kb on + strand, within PP_4363at 4953.240 kb on + strand, within PP_4363at 4953.240 kb on + strand, within PP_4363at 4953.240 kb on + strand, within PP_4363at 4953.248 kb on + strand, within PP_4363at 4953.249 kb on - strand, within PP_4363at 4953.249 kb on - strand, within PP_4363at 4953.249 kb on - strand, within PP_4363

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
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4,950,055 - PP_4358 0.70 +0.8
4,950,055 - PP_4358 0.70 +0.7
4,950,055 - PP_4358 0.70 -0.6
4,950,069 + PP_4358 0.72 -0.0
4,950,069 + PP_4358 0.72 +0.8
4,950,069 + PP_4358 0.72 -0.1
4,950,070 - PP_4358 0.72 +1.5
4,950,151 + PP_4358 0.80 -1.5
4,950,152 - PP_4358 0.80 -0.6
4,950,153 + PP_4358 0.80 -0.0
4,950,154 - PP_4358 0.80 +0.3
4,950,208 + PP_4358 0.86 -0.6
4,950,335 + +0.2
4,950,337 - +1.3
4,950,354 + +0.6
4,950,354 + -0.1
4,950,355 - +0.6
4,950,355 - +0.0
4,950,355 - -0.9
4,950,355 - -0.0
4,950,362 + -2.5
4,950,584 + PP_4359 0.46 +0.6
4,950,584 + PP_4359 0.46 +0.0
4,950,584 + PP_4359 0.46 -0.0
4,950,585 - PP_4359 0.47 -0.5
4,950,585 - PP_4359 0.47 +0.2
4,950,585 - PP_4359 0.47 +0.6
4,950,592 + PP_4359 0.48 +0.7
4,950,592 + PP_4359 0.48 +0.3
4,950,606 + PP_4359 0.51 +0.2
4,950,606 + PP_4359 0.51 +0.3
4,950,607 - PP_4359 0.51 +0.2
4,950,663 + PP_4359 0.62 -0.2
4,950,663 + PP_4359 0.62 +0.6
4,950,663 + PP_4359 0.62 +0.2
4,950,663 + PP_4359 0.62 -0.5
4,950,663 + PP_4359 0.62 +0.2
4,950,663 + PP_4359 0.62 +0.3
4,950,664 - PP_4359 0.62 +1.0
4,950,664 - PP_4359 0.62 -0.0
4,950,664 - PP_4359 0.62 -0.3
4,950,664 - PP_4359 0.62 -0.5
4,950,665 + PP_4359 0.63 -0.5
4,950,743 - PP_4359 0.78 -0.9
4,950,814 + +0.5
4,950,856 + +0.5
4,950,857 - +0.8
4,950,857 - +0.7
4,950,911 - +0.2
4,951,006 - -0.2
4,951,006 - +0.5
4,951,014 + +0.3
4,951,014 + +0.3
4,951,014 + +1.2
4,951,014 + +0.5
4,951,014 + +0.4
4,951,015 - +0.7
4,951,015 - +0.0
4,951,015 - +1.0
4,951,392 + PP_4361 0.30 +0.9
4,951,392 + PP_4361 0.30 -0.1
4,951,392 + PP_4361 0.30 +0.3
4,951,392 + PP_4361 0.30 +0.3
4,951,393 - PP_4361 0.30 +0.1
4,951,393 - PP_4361 0.30 +0.5
4,951,393 - PP_4361 0.30 +0.4
4,951,640 - PP_4361 0.50 +0.6
4,951,663 + PP_4361 0.52 +0.9
4,951,663 + PP_4361 0.52 +1.1
4,951,664 - PP_4361 0.52 +0.6
4,952,358 + -3.2
4,952,378 + +0.3
4,952,439 - PP_4362 0.28 -0.1
4,952,627 + PP_4362 0.83 +0.9
4,952,627 + PP_4362 0.83 -0.6
4,952,628 - PP_4362 0.84 +0.2
4,952,628 - PP_4362 0.84 +0.3
4,952,628 - PP_4362 0.84 +0.6
4,952,662 + -2.1
4,952,663 - +0.5
4,952,676 + -0.1
4,952,676 + +0.8
4,952,676 + +0.6
4,952,676 + +0.5
4,952,677 - +1.4
4,952,677 - -0.8
4,952,677 - +0.3
4,952,718 + +0.7
4,952,746 + -0.6
4,952,746 + +0.2
4,952,746 + +0.4
4,952,956 + PP_4363 0.13 -1.3
4,952,956 + +0.7
4,952,956 + PP_4363 0.13 -0.8
4,952,957 - PP_4363 0.13 +0.2
4,952,957 - PP_4363 0.13 +0.4
4,952,957 - PP_4363 0.13 -0.1
4,953,002 + PP_4363 0.15 +0.1
4,953,005 + PP_4363 0.16 -0.3
4,953,005 + PP_4363 0.16 -0.7
4,953,080 + PP_4363 0.20 -0.8
4,953,081 - PP_4363 0.20 +0.4
4,953,081 - PP_4363 0.20 +1.5
4,953,081 - PP_4363 0.20 +0.0
4,953,081 - PP_4363 0.20 +0.3
4,953,114 + PP_4363 0.22 -0.5
4,953,115 - PP_4363 0.22 +0.4
4,953,159 - PP_4363 0.25 -0.7
4,953,240 + PP_4363 0.30 -0.2
4,953,240 + PP_4363 0.30 -2.6
4,953,240 + PP_4363 0.30 -0.3
4,953,240 + PP_4363 0.30 -0.5
4,953,240 + PP_4363 0.30 -0.2
4,953,248 + PP_4363 0.30 -0.1
4,953,249 - PP_4363 0.30 +0.2
4,953,249 - PP_4363 0.30 +1.3
4,953,249 - PP_4363 0.30 +0.3

Or see this region's nucleotide sequence