Experiment: Growth at pH9 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3963 and PP_3964 are separated by 213 nucleotides PP_3964 and PP_3965 are separated by 63 nucleotides PP_3965 and PP_3966 overlap by 4 nucleotides PP_3966 and PP_3967 are separated by 175 nucleotides
PP_3963: PP_3963 - conserved protein of unknown function, at 4,473,460 to 4,473,786
_3963
PP_3964: PP_3964 - transposase, at 4,474,000 to 4,475,535
_3964
PP_3965: PP_3965 - transposase, at 4,475,599 to 4,475,934
_3965
PP_3966: PP_3966 - transposase, at 4,475,931 to 4,476,251
_3966
PP_3967: PP_3967 - MutT/nudix family protein, at 4,476,427 to 4,476,867
_3967
Position (kb) 4473
4474
4475
4476 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4473.017 kb on + strand at 4473.017 kb on + strand at 4473.057 kb on + strand at 4473.058 kb on - strand at 4473.198 kb on + strand at 4473.199 kb on - strand at 4473.271 kb on + strand at 4473.271 kb on + strand at 4473.271 kb on + strand at 4473.272 kb on - strand at 4473.272 kb on - strand at 4473.272 kb on - strand at 4473.276 kb on + strand at 4473.277 kb on - strand at 4473.300 kb on + strand at 4473.300 kb on + strand at 4473.300 kb on + strand at 4473.300 kb on + strand at 4473.300 kb on + strand at 4473.300 kb on + strand at 4473.300 kb on + strand at 4473.301 kb on - strand at 4473.301 kb on - strand at 4473.301 kb on - strand at 4473.301 kb on - strand at 4473.301 kb on - strand at 4473.301 kb on - strand at 4473.304 kb on + strand at 4473.304 kb on + strand at 4473.304 kb on + strand at 4473.304 kb on + strand at 4473.304 kb on + strand at 4473.304 kb on + strand at 4473.304 kb on + strand at 4473.305 kb on - strand at 4473.305 kb on - strand at 4473.305 kb on - strand at 4473.305 kb on - strand at 4473.305 kb on - strand at 4473.324 kb on + strand at 4473.325 kb on - strand at 4473.334 kb on + strand at 4473.334 kb on + strand at 4473.335 kb on - strand at 4473.343 kb on + strand at 4473.344 kb on - strand at 4473.344 kb on - strand at 4473.344 kb on - strand at 4473.346 kb on + strand at 4473.346 kb on + strand at 4473.347 kb on - strand at 4473.347 kb on - strand at 4473.347 kb on - strand at 4473.347 kb on - strand at 4473.372 kb on + strand at 4473.372 kb on + strand at 4473.372 kb on + strand at 4473.723 kb on + strand, within PP_3963 at 4473.724 kb on - strand, within PP_3963 at 4473.724 kb on - strand, within PP_3963 at 4473.744 kb on + strand, within PP_3963 at 4473.744 kb on + strand, within PP_3963 at 4473.745 kb on - strand, within PP_3963 at 4473.745 kb on - strand, within PP_3963 at 4473.792 kb on + strand at 4473.793 kb on - strand at 4473.880 kb on - strand at 4473.897 kb on - strand at 4473.956 kb on + strand at 4473.970 kb on + strand at 4473.996 kb on + strand at 4473.996 kb on + strand at 4473.996 kb on + strand at 4473.997 kb on - strand at 4473.997 kb on - strand at 4474.092 kb on - strand at 4474.152 kb on + strand at 4474.295 kb on + strand, within PP_3964 at 4474.399 kb on + strand, within PP_3964 at 4474.451 kb on + strand, within PP_3964 at 4474.452 kb on - strand, within PP_3964 at 4474.452 kb on - strand, within PP_3964 at 4474.673 kb on + strand, within PP_3964 at 4474.725 kb on - strand, within PP_3964 at 4474.725 kb on - strand, within PP_3964 at 4475.287 kb on - strand, within PP_3964 at 4475.600 kb on + strand at 4475.611 kb on - strand at 4475.611 kb on - strand at 4475.816 kb on + strand, within PP_3965 at 4476.434 kb on + strand at 4476.434 kb on + strand at 4476.434 kb on + strand at 4476.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose remove 4,473,017 + +0.6 4,473,017 + -0.1 4,473,057 + +0.7 4,473,058 - +1.2 4,473,198 + +0.8 4,473,199 - -0.2 4,473,271 + -0.1 4,473,271 + +1.3 4,473,271 + +0.8 4,473,272 - -0.0 4,473,272 - -0.9 4,473,272 - -1.6 4,473,276 + +0.3 4,473,277 - -0.6 4,473,300 + -0.0 4,473,300 + -0.2 4,473,300 + +0.7 4,473,300 + -0.3 4,473,300 + +0.4 4,473,300 + +0.1 4,473,300 + -0.2 4,473,301 - -0.5 4,473,301 - -0.2 4,473,301 - +0.7 4,473,301 - -0.5 4,473,301 - -0.9 4,473,301 - +0.7 4,473,304 + -1.2 4,473,304 + +0.3 4,473,304 + -0.7 4,473,304 + +0.4 4,473,304 + -1.0 4,473,304 + -0.1 4,473,304 + +0.4 4,473,305 - -0.5 4,473,305 - -1.2 4,473,305 - +0.3 4,473,305 - -0.2 4,473,305 - +0.4 4,473,324 + +1.0 4,473,325 - +1.2 4,473,334 + -0.1 4,473,334 + +0.1 4,473,335 - +0.5 4,473,343 + -0.0 4,473,344 - -0.0 4,473,344 - +0.7 4,473,344 - -1.3 4,473,346 + +1.0 4,473,346 + +0.5 4,473,347 - +0.6 4,473,347 - +1.3 4,473,347 - -0.4 4,473,347 - +0.3 4,473,372 + +0.4 4,473,372 + +0.7 4,473,372 + -0.4 4,473,723 + PP_3963 0.80 +0.6 4,473,724 - PP_3963 0.81 +0.3 4,473,724 - PP_3963 0.81 -1.4 4,473,744 + PP_3963 0.87 +1.1 4,473,744 + PP_3963 0.87 -0.2 4,473,745 - PP_3963 0.87 -1.7 4,473,745 - PP_3963 0.87 -0.9 4,473,792 + -0.6 4,473,793 - +0.3 4,473,880 - +0.4 4,473,897 - +1.8 4,473,956 + +0.2 4,473,970 + +1.0 4,473,996 + +0.1 4,473,996 + -0.1 4,473,996 + +0.2 4,473,997 - -0.2 4,473,997 - +0.6 4,474,092 - -0.3 4,474,152 + +0.7 4,474,295 + PP_3964 0.19 +0.8 4,474,399 + PP_3964 0.26 +0.1 4,474,451 + PP_3964 0.29 +0.8 4,474,452 - PP_3964 0.29 +0.5 4,474,452 - PP_3964 0.29 +0.6 4,474,673 + PP_3964 0.44 +1.4 4,474,725 - PP_3964 0.47 +0.8 4,474,725 - PP_3964 0.47 +0.1 4,475,287 - PP_3964 0.84 +0.2 4,475,600 + -1.6 4,475,611 - +0.7 4,475,611 - -0.5 4,475,816 + PP_3965 0.65 -2.3 4,476,434 + +0.0 4,476,434 + +2.0 4,476,434 + +0.7 4,476,435 - -0.5
Or see this region's nucleotide sequence