Strain Fitness in Pseudomonas putida KT2440 around PP_3292

Experiment: Growth at pH9 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3291 and PP_3292 are separated by 72 nucleotidesPP_3292 and PP_3293 are separated by 59 nucleotidesPP_3293 and PP_3294 are separated by 212 nucleotides PP_3291: PP_3291 - Metallo-beta-lactamase family protein, at 3,725,348 to 3,726,715 _3291 PP_3292: PP_3292 - conserved membrane protein of unknown function, at 3,726,788 to 3,727,432 _3292 PP_3293: PP_3293 - conserved membrane protein of unknown function, at 3,727,492 to 3,727,917 _3293 PP_3294: PP_3294 - Universal stress protein family, at 3,728,130 to 3,729,020 _3294 Position (kb) 3726 3727 3728Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3725.830 kb on + strand, within PP_3291at 3725.830 kb on + strand, within PP_3291at 3725.831 kb on - strand, within PP_3291at 3725.831 kb on - strand, within PP_3291at 3725.968 kb on + strandat 3725.968 kb on + strand, within PP_3291at 3725.968 kb on + strand, within PP_3291at 3725.972 kb on + strand, within PP_3291at 3725.972 kb on + strand, within PP_3291at 3725.973 kb on - strand, within PP_3291at 3726.012 kb on - strand, within PP_3291at 3726.063 kb on + strand, within PP_3291at 3726.101 kb on + strand, within PP_3291at 3726.101 kb on + strand, within PP_3291at 3726.101 kb on + strand, within PP_3291at 3726.101 kb on + strand, within PP_3291at 3726.101 kb on + strand, within PP_3291at 3726.101 kb on + strand, within PP_3291at 3726.102 kb on - strand, within PP_3291at 3726.102 kb on - strand, within PP_3291at 3726.102 kb on - strand, within PP_3291at 3726.104 kb on + strand, within PP_3291at 3726.104 kb on + strand, within PP_3291at 3726.104 kb on + strand, within PP_3291at 3726.104 kb on + strand, within PP_3291at 3726.104 kb on + strand, within PP_3291at 3726.104 kb on + strand, within PP_3291at 3726.104 kb on + strand, within PP_3291at 3726.104 kb on + strand, within PP_3291at 3726.104 kb on + strand, within PP_3291at 3726.104 kb on + strand, within PP_3291at 3726.105 kb on - strand, within PP_3291at 3726.105 kb on - strand, within PP_3291at 3726.105 kb on - strand, within PP_3291at 3726.110 kb on + strand, within PP_3291at 3726.111 kb on - strand, within PP_3291at 3726.111 kb on - strand, within PP_3291at 3726.111 kb on - strand, within PP_3291at 3726.111 kb on - strand, within PP_3291at 3726.152 kb on + strand, within PP_3291at 3726.153 kb on - strand, within PP_3291at 3726.153 kb on - strand, within PP_3291at 3726.490 kb on + strand, within PP_3291at 3726.491 kb on - strand, within PP_3291at 3726.593 kb on + strandat 3726.593 kb on + strandat 3726.594 kb on - strandat 3726.594 kb on - strandat 3726.594 kb on - strandat 3726.594 kb on - strandat 3726.784 kb on - strandat 3726.784 kb on - strandat 3726.803 kb on - strandat 3726.858 kb on + strand, within PP_3292at 3726.858 kb on + strand, within PP_3292at 3726.859 kb on - strand, within PP_3292at 3726.874 kb on - strand, within PP_3292at 3727.214 kb on - strand, within PP_3292at 3727.214 kb on - strand, within PP_3292at 3727.215 kb on + strand, within PP_3292at 3727.215 kb on + strand, within PP_3292at 3727.215 kb on + strand, within PP_3292at 3727.216 kb on - strandat 3727.216 kb on - strand, within PP_3292at 3727.493 kb on + strandat 3727.589 kb on + strand, within PP_3293at 3727.635 kb on + strand, within PP_3293at 3727.636 kb on - strand, within PP_3293at 3727.637 kb on + strand, within PP_3293at 3727.637 kb on + strand, within PP_3293at 3727.638 kb on - strand, within PP_3293at 3727.638 kb on - strand, within PP_3293at 3727.638 kb on - strand, within PP_3293at 3727.638 kb on - strand, within PP_3293at 3727.638 kb on - strand, within PP_3293at 3727.638 kb on - strand, within PP_3293at 3727.638 kb on - strand, within PP_3293at 3727.727 kb on + strand, within PP_3293at 3727.727 kb on + strand, within PP_3293at 3727.728 kb on - strand, within PP_3293at 3727.728 kb on - strand, within PP_3293at 3727.730 kb on + strand, within PP_3293at 3727.730 kb on + strand, within PP_3293at 3727.730 kb on + strand, within PP_3293at 3727.859 kb on + strand, within PP_3293at 3727.978 kb on + strandat 3727.978 kb on + strandat 3727.979 kb on - strandat 3728.006 kb on - strandat 3728.019 kb on + strandat 3728.019 kb on + strandat 3728.019 kb on + strandat 3728.019 kb on + strandat 3728.019 kb on + strandat 3728.020 kb on - strandat 3728.053 kb on + strandat 3728.053 kb on + strandat 3728.054 kb on - strandat 3728.054 kb on - strandat 3728.057 kb on + strandat 3728.057 kb on + strandat 3728.058 kb on - strandat 3728.087 kb on - strandat 3728.125 kb on + strandat 3728.125 kb on + strandat 3728.126 kb on - strandat 3728.157 kb on - strandat 3728.236 kb on + strand, within PP_3294at 3728.236 kb on + strand, within PP_3294at 3728.237 kb on - strand, within PP_3294at 3728.260 kb on + strand, within PP_3294

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
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3,725,830 + PP_3291 0.35 -1.3
3,725,830 + PP_3291 0.35 +0.1
3,725,831 - PP_3291 0.35 -0.3
3,725,831 - PP_3291 0.35 +0.1
3,725,968 + -1.1
3,725,968 + PP_3291 0.45 +0.1
3,725,968 + PP_3291 0.45 -0.5
3,725,972 + PP_3291 0.46 +0.7
3,725,972 + PP_3291 0.46 -2.0
3,725,973 - PP_3291 0.46 +0.5
3,726,012 - PP_3291 0.49 -0.7
3,726,063 + PP_3291 0.52 +0.2
3,726,101 + PP_3291 0.55 -0.2
3,726,101 + PP_3291 0.55 -0.5
3,726,101 + PP_3291 0.55 -0.9
3,726,101 + PP_3291 0.55 +0.7
3,726,101 + PP_3291 0.55 -0.8
3,726,101 + PP_3291 0.55 +0.8
3,726,102 - PP_3291 0.55 +0.0
3,726,102 - PP_3291 0.55 -0.1
3,726,102 - PP_3291 0.55 -0.2
3,726,104 + PP_3291 0.55 -1.6
3,726,104 + PP_3291 0.55 -4.2
3,726,104 + PP_3291 0.55 +0.2
3,726,104 + PP_3291 0.55 -0.1
3,726,104 + PP_3291 0.55 +0.9
3,726,104 + PP_3291 0.55 -0.2
3,726,104 + PP_3291 0.55 +0.5
3,726,104 + PP_3291 0.55 +0.9
3,726,104 + PP_3291 0.55 +1.9
3,726,104 + PP_3291 0.55 -0.3
3,726,105 - PP_3291 0.55 +0.0
3,726,105 - PP_3291 0.55 -0.4
3,726,105 - PP_3291 0.55 -1.0
3,726,110 + PP_3291 0.56 +0.2
3,726,111 - PP_3291 0.56 -3.2
3,726,111 - PP_3291 0.56 +0.2
3,726,111 - PP_3291 0.56 -0.1
3,726,111 - PP_3291 0.56 -1.4
3,726,152 + PP_3291 0.59 +0.4
3,726,153 - PP_3291 0.59 -0.0
3,726,153 - PP_3291 0.59 -0.0
3,726,490 + PP_3291 0.83 +0.7
3,726,491 - PP_3291 0.84 -0.3
3,726,593 + +0.5
3,726,593 + -0.3
3,726,594 - +0.7
3,726,594 - +0.9
3,726,594 - +0.2
3,726,594 - -2.7
3,726,784 - -0.3
3,726,784 - +1.1
3,726,803 - -0.4
3,726,858 + PP_3292 0.11 +1.1
3,726,858 + PP_3292 0.11 +0.1
3,726,859 - PP_3292 0.11 +0.3
3,726,874 - PP_3292 0.13 -0.1
3,727,214 - PP_3292 0.66 -0.3
3,727,214 - PP_3292 0.66 +0.7
3,727,215 + PP_3292 0.66 +1.2
3,727,215 + PP_3292 0.66 +0.9
3,727,215 + PP_3292 0.66 +0.9
3,727,216 - +0.5
3,727,216 - PP_3292 0.66 -0.2
3,727,493 + -0.9
3,727,589 + PP_3293 0.23 +1.0
3,727,635 + PP_3293 0.34 +0.8
3,727,636 - PP_3293 0.34 +0.2
3,727,637 + PP_3293 0.34 -0.1
3,727,637 + PP_3293 0.34 -0.2
3,727,638 - PP_3293 0.34 +0.7
3,727,638 - PP_3293 0.34 -0.4
3,727,638 - PP_3293 0.34 +1.5
3,727,638 - PP_3293 0.34 +1.5
3,727,638 - PP_3293 0.34 -0.4
3,727,638 - PP_3293 0.34 -0.3
3,727,638 - PP_3293 0.34 +1.1
3,727,727 + PP_3293 0.55 -2.1
3,727,727 + PP_3293 0.55 +0.9
3,727,728 - PP_3293 0.55 -0.7
3,727,728 - PP_3293 0.55 -1.0
3,727,730 + PP_3293 0.56 +0.4
3,727,730 + PP_3293 0.56 -0.1
3,727,730 + PP_3293 0.56 -1.1
3,727,859 + PP_3293 0.86 -0.1
3,727,978 + +0.2
3,727,978 + -0.1
3,727,979 - -0.3
3,728,006 - +0.2
3,728,019 + +0.3
3,728,019 + +0.6
3,728,019 + -0.4
3,728,019 + +0.1
3,728,019 + -0.1
3,728,020 - +0.8
3,728,053 + -0.0
3,728,053 + +0.3
3,728,054 - +0.3
3,728,054 - -0.1
3,728,057 + +0.2
3,728,057 + -0.2
3,728,058 - +0.2
3,728,087 - -0.1
3,728,125 + +2.1
3,728,125 + -1.0
3,728,126 - -1.0
3,728,157 - +0.2
3,728,236 + PP_3294 0.12 +0.1
3,728,236 + PP_3294 0.12 +0.2
3,728,237 - PP_3294 0.12 -1.8
3,728,260 + PP_3294 0.15 +0.2

Or see this region's nucleotide sequence