Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24715

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttraD and traT are separated by 251 nucleotidestraT and traS are separated by 13 nucleotidestraS and traG overlap by 4 nucleotides NOLOHH_24705: traD - type IV conjugative transfer system coupling protein TraD, at 81,913 to 84,102 traD NOLOHH_24710: traT - TraT complement resistance protein, at 84,354 to 85,085 traT NOLOHH_24715: traS - conjugal transfer entry exclusion protein TraS, at 85,099 to 85,608 traS NOLOHH_24720: traG - conjugal transfer mating pair stabilization protein TraG, at 85,605 to 88,430 traG Position (kb) 85 86Strain fitness (log2 ratio) -2 -1 0 1 2at 84.140 kb on - strandat 84.351 kb on + strandat 84.464 kb on + strand, within traTat 84.464 kb on + strand, within traTat 84.464 kb on + strand, within traTat 84.464 kb on + strand, within traTat 84.464 kb on + strand, within traTat 84.558 kb on - strand, within traTat 84.558 kb on - strand, within traTat 84.561 kb on - strand, within traTat 84.561 kb on - strand, within traTat 84.593 kb on + strand, within traTat 84.594 kb on - strand, within traTat 84.595 kb on + strand, within traTat 84.596 kb on - strand, within traTat 84.596 kb on - strand, within traTat 84.686 kb on + strand, within traTat 84.687 kb on - strand, within traTat 84.687 kb on - strand, within traTat 84.689 kb on - strand, within traTat 84.812 kb on - strand, within traTat 84.815 kb on - strand, within traTat 84.815 kb on - strand, within traTat 84.928 kb on - strand, within traTat 85.416 kb on + strand, within traSat 85.417 kb on - strand, within traSat 85.525 kb on + strand, within traSat 85.558 kb on + strandat 85.681 kb on - strandat 85.795 kb on - strandat 85.977 kb on - strand, within traGat 85.982 kb on + strand, within traGat 86.091 kb on - strand, within traGat 86.102 kb on + strand, within traGat 86.103 kb on - strand, within traGat 86.137 kb on + strand, within traGat 86.138 kb on - strand, within traGat 86.138 kb on - strand, within traGat 86.138 kb on - strand, within traGat 86.212 kb on + strand, within traGat 86.212 kb on + strand, within traGat 86.212 kb on + strand, within traGat 86.212 kb on + strand, within traGat 86.212 kb on + strand, within traGat 86.213 kb on - strand, within traGat 86.213 kb on - strand, within traGat 86.231 kb on + strand, within traGat 86.251 kb on + strand, within traGat 86.252 kb on - strand, within traGat 86.319 kb on - strand, within traGat 86.356 kb on + strand, within traGat 86.539 kb on - strand, within traGat 86.560 kb on + strand, within traGat 86.560 kb on + strand, within traGat 86.561 kb on - strand, within traGat 86.561 kb on - strand, within traGat 86.561 kb on - strand, within traGat 86.583 kb on - strand, within traGat 86.583 kb on - strand, within traG

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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84,140 - -0.3
84,351 + +0.2
84,464 + traT NOLOHH_24710 0.15 +0.9
84,464 + traT NOLOHH_24710 0.15 +0.2
84,464 + traT NOLOHH_24710 0.15 -1.7
84,464 + traT NOLOHH_24710 0.15 -0.1
84,464 + traT NOLOHH_24710 0.15 +0.1
84,558 - traT NOLOHH_24710 0.28 +0.9
84,558 - traT NOLOHH_24710 0.28 -1.9
84,561 - traT NOLOHH_24710 0.28 -0.3
84,561 - traT NOLOHH_24710 0.28 +0.1
84,593 + traT NOLOHH_24710 0.33 +0.9
84,594 - traT NOLOHH_24710 0.33 -0.1
84,595 + traT NOLOHH_24710 0.33 +0.1
84,596 - traT NOLOHH_24710 0.33 -0.1
84,596 - traT NOLOHH_24710 0.33 +0.9
84,686 + traT NOLOHH_24710 0.45 -1.1
84,687 - traT NOLOHH_24710 0.45 +1.1
84,687 - traT NOLOHH_24710 0.45 +0.9
84,689 - traT NOLOHH_24710 0.46 -1.5
84,812 - traT NOLOHH_24710 0.63 +0.3
84,815 - traT NOLOHH_24710 0.63 -0.9
84,815 - traT NOLOHH_24710 0.63 -0.4
84,928 - traT NOLOHH_24710 0.78 +0.9
85,416 + traS NOLOHH_24715 0.62 -1.6
85,417 - traS NOLOHH_24715 0.62 +0.1
85,525 + traS NOLOHH_24715 0.84 +1.3
85,558 + +0.9
85,681 - +0.2
85,795 - +1.4
85,977 - traG NOLOHH_24720 0.13 +0.9
85,982 + traG NOLOHH_24720 0.13 -0.7
86,091 - traG NOLOHH_24720 0.17 -0.6
86,102 + traG NOLOHH_24720 0.18 +0.1
86,103 - traG NOLOHH_24720 0.18 -0.1
86,137 + traG NOLOHH_24720 0.19 +1.1
86,138 - traG NOLOHH_24720 0.19 +0.9
86,138 - traG NOLOHH_24720 0.19 +1.6
86,138 - traG NOLOHH_24720 0.19 +1.9
86,212 + traG NOLOHH_24720 0.21 -1.4
86,212 + traG NOLOHH_24720 0.21 +0.6
86,212 + traG NOLOHH_24720 0.21 +1.4
86,212 + traG NOLOHH_24720 0.21 +2.2
86,212 + traG NOLOHH_24720 0.21 +1.6
86,213 - traG NOLOHH_24720 0.22 -0.1
86,213 - traG NOLOHH_24720 0.22 +0.1
86,231 + traG NOLOHH_24720 0.22 +0.9
86,251 + traG NOLOHH_24720 0.23 +0.9
86,252 - traG NOLOHH_24720 0.23 +1.9
86,319 - traG NOLOHH_24720 0.25 -0.5
86,356 + traG NOLOHH_24720 0.27 +1.1
86,539 - traG NOLOHH_24720 0.33 +0.3
86,560 + traG NOLOHH_24720 0.34 +2.3
86,560 + traG NOLOHH_24720 0.34 +0.1
86,561 - traG NOLOHH_24720 0.34 +0.1
86,561 - traG NOLOHH_24720 0.34 -0.5
86,561 - traG NOLOHH_24720 0.34 +0.9
86,583 - traG NOLOHH_24720 0.35 +0.3
86,583 - traG NOLOHH_24720 0.35 -0.1

Or see this region's nucleotide sequence