Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24710

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttraD and traT are separated by 251 nucleotidestraT and traS are separated by 13 nucleotidestraS and traG overlap by 4 nucleotides NOLOHH_24705: traD - type IV conjugative transfer system coupling protein TraD, at 81,913 to 84,102 traD NOLOHH_24710: traT - TraT complement resistance protein, at 84,354 to 85,085 traT NOLOHH_24715: traS - conjugal transfer entry exclusion protein TraS, at 85,099 to 85,608 traS NOLOHH_24720: traG - conjugal transfer mating pair stabilization protein TraG, at 85,605 to 88,430 traG Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1 2at 83.414 kb on + strand, within traDat 83.414 kb on + strand, within traDat 83.415 kb on - strand, within traDat 83.418 kb on - strand, within traDat 83.460 kb on + strand, within traDat 83.460 kb on + strand, within traDat 83.460 kb on + strand, within traDat 83.461 kb on - strand, within traDat 83.480 kb on + strand, within traDat 83.481 kb on - strand, within traDat 83.587 kb on + strand, within traDat 83.740 kb on - strand, within traDat 83.779 kb on + strand, within traDat 83.805 kb on - strand, within traDat 83.805 kb on - strand, within traDat 83.805 kb on - strand, within traDat 83.855 kb on + strand, within traDat 83.856 kb on - strand, within traDat 83.870 kb on - strand, within traDat 83.888 kb on - strandat 84.140 kb on - strandat 84.351 kb on + strandat 84.464 kb on + strand, within traTat 84.464 kb on + strand, within traTat 84.464 kb on + strand, within traTat 84.464 kb on + strand, within traTat 84.464 kb on + strand, within traTat 84.558 kb on - strand, within traTat 84.558 kb on - strand, within traTat 84.561 kb on - strand, within traTat 84.561 kb on - strand, within traTat 84.593 kb on + strand, within traTat 84.594 kb on - strand, within traTat 84.595 kb on + strand, within traTat 84.596 kb on - strand, within traTat 84.596 kb on - strand, within traTat 84.686 kb on + strand, within traTat 84.687 kb on - strand, within traTat 84.687 kb on - strand, within traTat 84.689 kb on - strand, within traTat 84.812 kb on - strand, within traTat 84.815 kb on - strand, within traTat 84.815 kb on - strand, within traTat 84.928 kb on - strand, within traTat 85.416 kb on + strand, within traSat 85.417 kb on - strand, within traSat 85.525 kb on + strand, within traSat 85.558 kb on + strandat 85.681 kb on - strandat 85.795 kb on - strandat 85.977 kb on - strand, within traGat 85.982 kb on + strand, within traG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
83,414 + traD NOLOHH_24705 0.69 +0.6
83,414 + traD NOLOHH_24705 0.69 +0.9
83,415 - traD NOLOHH_24705 0.69 +0.3
83,418 - traD NOLOHH_24705 0.69 +0.2
83,460 + traD NOLOHH_24705 0.71 +0.9
83,460 + traD NOLOHH_24705 0.71 +0.3
83,460 + traD NOLOHH_24705 0.71 -0.7
83,461 - traD NOLOHH_24705 0.71 -1.5
83,480 + traD NOLOHH_24705 0.72 +0.9
83,481 - traD NOLOHH_24705 0.72 +0.3
83,587 + traD NOLOHH_24705 0.76 -0.1
83,740 - traD NOLOHH_24705 0.83 -1.1
83,779 + traD NOLOHH_24705 0.85 +1.4
83,805 - traD NOLOHH_24705 0.86 -1.7
83,805 - traD NOLOHH_24705 0.86 +0.9
83,805 - traD NOLOHH_24705 0.86 -2.3
83,855 + traD NOLOHH_24705 0.89 -0.3
83,856 - traD NOLOHH_24705 0.89 +2.1
83,870 - traD NOLOHH_24705 0.89 -1.5
83,888 - +0.9
84,140 - -0.3
84,351 + +0.2
84,464 + traT NOLOHH_24710 0.15 +0.9
84,464 + traT NOLOHH_24710 0.15 +0.2
84,464 + traT NOLOHH_24710 0.15 -1.7
84,464 + traT NOLOHH_24710 0.15 -0.1
84,464 + traT NOLOHH_24710 0.15 +0.1
84,558 - traT NOLOHH_24710 0.28 +0.9
84,558 - traT NOLOHH_24710 0.28 -1.9
84,561 - traT NOLOHH_24710 0.28 -0.3
84,561 - traT NOLOHH_24710 0.28 +0.1
84,593 + traT NOLOHH_24710 0.33 +0.9
84,594 - traT NOLOHH_24710 0.33 -0.1
84,595 + traT NOLOHH_24710 0.33 +0.1
84,596 - traT NOLOHH_24710 0.33 -0.1
84,596 - traT NOLOHH_24710 0.33 +0.9
84,686 + traT NOLOHH_24710 0.45 -1.1
84,687 - traT NOLOHH_24710 0.45 +1.1
84,687 - traT NOLOHH_24710 0.45 +0.9
84,689 - traT NOLOHH_24710 0.46 -1.5
84,812 - traT NOLOHH_24710 0.63 +0.3
84,815 - traT NOLOHH_24710 0.63 -0.9
84,815 - traT NOLOHH_24710 0.63 -0.4
84,928 - traT NOLOHH_24710 0.78 +0.9
85,416 + traS NOLOHH_24715 0.62 -1.6
85,417 - traS NOLOHH_24715 0.62 +0.1
85,525 + traS NOLOHH_24715 0.84 +1.3
85,558 + +0.9
85,681 - +0.2
85,795 - +1.4
85,977 - traG NOLOHH_24720 0.13 +0.9
85,982 + traG NOLOHH_24720 0.13 -0.7

Or see this region's nucleotide sequence