Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24300

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntssb and NOLOHH_24295 are separated by 781 nucleotidesNOLOHH_24295 and NOLOHH_24300 overlap by 4 nucleotidesNOLOHH_24300 and NOLOHH_24305 overlap by 31 nucleotides NOLOHH_24290: ssb - single-stranded DNA-binding protein, at 9,801 to 10,328 ssb NOLOHH_24295: NOLOHH_24295 - YffA, at 11,110 to 11,301 _24295 NOLOHH_24300: NOLOHH_24300 - Uncharacterized protein YubJ, at 11,298 to 11,792 _24300 NOLOHH_24305: NOLOHH_24305 - antirestriction protein, at 11,762 to 12,187 _24305 Position (kb) 11 12Strain fitness (log2 ratio) -1 0 1 2at 10.334 kb on - strandat 10.334 kb on - strandat 10.334 kb on - strandat 10.556 kb on + strandat 10.557 kb on - strandat 10.557 kb on - strandat 10.619 kb on + strandat 10.619 kb on + strandat 10.706 kb on + strandat 11.138 kb on + strand, within NOLOHH_24295at 11.139 kb on - strand, within NOLOHH_24295at 11.139 kb on - strand, within NOLOHH_24295at 11.139 kb on - strand, within NOLOHH_24295at 11.139 kb on - strand, within NOLOHH_24295at 11.247 kb on + strand, within NOLOHH_24295at 11.296 kb on - strandat 11.329 kb on - strandat 11.404 kb on + strand, within NOLOHH_24300at 11.405 kb on - strand, within NOLOHH_24300at 11.613 kb on + strand, within NOLOHH_24300at 11.614 kb on - strand, within NOLOHH_24300at 11.711 kb on + strand, within NOLOHH_24300at 11.711 kb on + strand, within NOLOHH_24300at 11.712 kb on - strand, within NOLOHH_24300at 11.712 kb on - strand, within NOLOHH_24300at 11.778 kb on + strandat 11.779 kb on - strandat 11.918 kb on + strand, within NOLOHH_24305at 11.918 kb on + strand, within NOLOHH_24305at 11.919 kb on - strand, within NOLOHH_24305at 12.003 kb on + strand, within NOLOHH_24305at 12.003 kb on + strand, within NOLOHH_24305at 12.004 kb on - strand, within NOLOHH_24305at 12.087 kb on + strand, within NOLOHH_24305at 12.088 kb on - strand, within NOLOHH_24305at 12.088 kb on - strand, within NOLOHH_24305at 12.088 kb on - strand, within NOLOHH_24305at 12.088 kb on - strand, within NOLOHH_24305at 12.088 kb on - strand, within NOLOHH_24305at 12.088 kb on - strand, within NOLOHH_24305at 12.180 kb on + strandat 12.212 kb on - strandat 12.245 kb on - strandat 12.411 kb on + strandat 12.482 kb on + strandat 12.482 kb on + strandat 12.483 kb on - strandat 12.654 kb on - strandat 12.654 kb on - strandat 12.689 kb on - strandat 12.689 kb on - strandat 12.690 kb on + strandat 12.703 kb on + strandat 12.703 kb on + strandat 12.704 kb on - strandat 12.746 kb on + strandat 12.747 kb on - strandat 12.747 kb on - strandat 12.747 kb on - strandat 12.766 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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10,334 - +0.9
10,334 - +0.9
10,334 - +0.9
10,556 + -0.3
10,557 - -0.1
10,557 - -0.1
10,619 + +0.7
10,619 + +0.3
10,706 + -0.5
11,138 + NOLOHH_24295 0.15 +0.9
11,139 - NOLOHH_24295 0.15 -0.7
11,139 - NOLOHH_24295 0.15 +0.3
11,139 - NOLOHH_24295 0.15 -0.5
11,139 - NOLOHH_24295 0.15 +1.3
11,247 + NOLOHH_24295 0.71 -0.1
11,296 - +0.3
11,329 - +1.3
11,404 + NOLOHH_24300 0.21 -0.1
11,405 - NOLOHH_24300 0.22 +1.3
11,613 + NOLOHH_24300 0.64 +0.5
11,614 - NOLOHH_24300 0.64 +0.3
11,711 + NOLOHH_24300 0.83 +0.5
11,711 + NOLOHH_24300 0.83 +1.9
11,712 - NOLOHH_24300 0.84 +1.9
11,712 - NOLOHH_24300 0.84 +0.9
11,778 + +0.1
11,779 - +1.1
11,918 + NOLOHH_24305 0.37 -0.9
11,918 + NOLOHH_24305 0.37 +1.3
11,919 - NOLOHH_24305 0.37 +0.1
12,003 + NOLOHH_24305 0.57 -1.7
12,003 + NOLOHH_24305 0.57 +0.5
12,004 - NOLOHH_24305 0.57 +2.4
12,087 + NOLOHH_24305 0.76 -0.1
12,088 - NOLOHH_24305 0.77 -0.5
12,088 - NOLOHH_24305 0.77 -0.9
12,088 - NOLOHH_24305 0.77 -0.7
12,088 - NOLOHH_24305 0.77 -0.5
12,088 - NOLOHH_24305 0.77 -1.0
12,088 - NOLOHH_24305 0.77 -1.1
12,180 + -1.1
12,212 - -0.0
12,245 - -0.9
12,411 + +1.9
12,482 + -1.1
12,482 + +0.1
12,483 - -1.1
12,654 - +0.9
12,654 - +0.3
12,689 - +0.9
12,689 - +0.9
12,690 + +0.3
12,703 + +1.2
12,703 + +0.3
12,704 - -0.6
12,746 + -0.3
12,747 - +0.2
12,747 - +0.7
12,747 - -0.3
12,766 + +0.9

Or see this region's nucleotide sequence