Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ssb and NOLOHH_24295 are separated by 781 nucleotides NOLOHH_24295 and NOLOHH_24300 overlap by 4 nucleotides NOLOHH_24300 and NOLOHH_24305 overlap by 31 nucleotides
NOLOHH_24290: ssb - single-stranded DNA-binding protein, at 9,801 to 10,328
ssb
NOLOHH_24295: NOLOHH_24295 - YffA, at 11,110 to 11,301
_24295
NOLOHH_24300: NOLOHH_24300 - Uncharacterized protein YubJ, at 11,298 to 11,792
_24300
NOLOHH_24305: NOLOHH_24305 - antirestriction protein, at 11,762 to 12,187
_24305
Position (kb)
11
12 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 10.118 kb on - strand, within ssb at 10.118 kb on - strand, within ssb at 10.262 kb on - strand, within ssb at 10.262 kb on - strand, within ssb at 10.334 kb on - strand at 10.334 kb on - strand at 10.334 kb on - strand at 10.556 kb on + strand at 10.557 kb on - strand at 10.557 kb on - strand at 10.619 kb on + strand at 10.619 kb on + strand at 10.706 kb on + strand at 11.138 kb on + strand, within NOLOHH_24295 at 11.139 kb on - strand, within NOLOHH_24295 at 11.139 kb on - strand, within NOLOHH_24295 at 11.139 kb on - strand, within NOLOHH_24295 at 11.139 kb on - strand, within NOLOHH_24295 at 11.247 kb on + strand, within NOLOHH_24295 at 11.296 kb on - strand at 11.329 kb on - strand at 11.404 kb on + strand, within NOLOHH_24300 at 11.405 kb on - strand, within NOLOHH_24300 at 11.613 kb on + strand, within NOLOHH_24300 at 11.614 kb on - strand, within NOLOHH_24300 at 11.711 kb on + strand, within NOLOHH_24300 at 11.711 kb on + strand, within NOLOHH_24300 at 11.712 kb on - strand, within NOLOHH_24300 at 11.712 kb on - strand, within NOLOHH_24300 at 11.778 kb on + strand at 11.779 kb on - strand at 11.918 kb on + strand, within NOLOHH_24305 at 11.918 kb on + strand, within NOLOHH_24305 at 11.919 kb on - strand, within NOLOHH_24305 at 12.003 kb on + strand, within NOLOHH_24305 at 12.003 kb on + strand, within NOLOHH_24305 at 12.004 kb on - strand, within NOLOHH_24305 at 12.087 kb on + strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.180 kb on + strand at 12.212 kb on - strand at 12.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 10,118 - ssb NOLOHH_24290 0.60 -1.9 10,118 - ssb NOLOHH_24290 0.60 -0.7 10,262 - ssb NOLOHH_24290 0.87 +0.9 10,262 - ssb NOLOHH_24290 0.87 -1.5 10,334 - +0.9 10,334 - +0.9 10,334 - +0.9 10,556 + -0.3 10,557 - -0.1 10,557 - -0.1 10,619 + +0.7 10,619 + +0.3 10,706 + -0.5 11,138 + NOLOHH_24295 0.15 +0.9 11,139 - NOLOHH_24295 0.15 -0.7 11,139 - NOLOHH_24295 0.15 +0.3 11,139 - NOLOHH_24295 0.15 -0.5 11,139 - NOLOHH_24295 0.15 +1.3 11,247 + NOLOHH_24295 0.71 -0.1 11,296 - +0.3 11,329 - +1.3 11,404 + NOLOHH_24300 0.21 -0.1 11,405 - NOLOHH_24300 0.22 +1.3 11,613 + NOLOHH_24300 0.64 +0.5 11,614 - NOLOHH_24300 0.64 +0.3 11,711 + NOLOHH_24300 0.83 +0.5 11,711 + NOLOHH_24300 0.83 +1.9 11,712 - NOLOHH_24300 0.84 +1.9 11,712 - NOLOHH_24300 0.84 +0.9 11,778 + +0.1 11,779 - +1.1 11,918 + NOLOHH_24305 0.37 -0.9 11,918 + NOLOHH_24305 0.37 +1.3 11,919 - NOLOHH_24305 0.37 +0.1 12,003 + NOLOHH_24305 0.57 -1.7 12,003 + NOLOHH_24305 0.57 +0.5 12,004 - NOLOHH_24305 0.57 +2.4 12,087 + NOLOHH_24305 0.76 -0.1 12,088 - NOLOHH_24305 0.77 -0.5 12,088 - NOLOHH_24305 0.77 -0.9 12,088 - NOLOHH_24305 0.77 -0.7 12,088 - NOLOHH_24305 0.77 -0.5 12,088 - NOLOHH_24305 0.77 -1.0 12,088 - NOLOHH_24305 0.77 -1.1 12,180 + -1.1 12,212 - -0.0 12,245 - -0.9
Or see this region's nucleotide sequence