Strain Fitness in Escherichia coli ECOR27 around NOLOHH_23730

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnadD and cobC are separated by 23 nucleotidescobC and rsfS are separated by 259 nucleotidesrsfS and rlmH are separated by 3 nucleotidesrlmH and mrdA are separated by 30 nucleotides NOLOHH_23720: nadD - nicotinate-nucleotide adenylyltransferase, at 4,669,349 to 4,669,990 nadD NOLOHH_23725: cobC - adenosylcobalamin/alpha-ribazole phosphatase, at 4,670,014 to 4,670,625 cobC NOLOHH_23730: rsfS - ribosome silencing factor, at 4,670,885 to 4,671,202 rsfS NOLOHH_23735: rlmH - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 4,671,206 to 4,671,673 rlmH NOLOHH_23740: mrdA - peptidoglycan DD-transpeptidase MrdA, at 4,671,704 to 4,673,605 mrdA Position (kb) 4670 4671 4672Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4669.982 kb on + strandat 4669.991 kb on + strandat 4669.991 kb on + strandat 4669.992 kb on - strandat 4669.992 kb on - strandat 4670.066 kb on + strandat 4670.066 kb on + strandat 4670.066 kb on + strandat 4670.066 kb on + strandat 4670.066 kb on + strandat 4670.067 kb on - strandat 4670.068 kb on + strandat 4670.069 kb on - strandat 4670.138 kb on + strand, within cobCat 4670.138 kb on + strand, within cobCat 4670.165 kb on + strand, within cobCat 4670.166 kb on - strand, within cobCat 4670.236 kb on - strand, within cobCat 4670.236 kb on - strand, within cobCat 4670.418 kb on + strand, within cobCat 4670.435 kb on - strand, within cobCat 4670.468 kb on + strand, within cobCat 4670.492 kb on + strand, within cobCat 4670.493 kb on - strand, within cobCat 4670.514 kb on + strand, within cobCat 4670.514 kb on + strand, within cobCat 4670.515 kb on - strand, within cobCat 4670.560 kb on - strand, within cobCat 4670.725 kb on + strandat 4670.837 kb on + strandat 4670.837 kb on + strandat 4670.860 kb on + strandat 4670.958 kb on + strand, within rsfSat 4671.004 kb on + strand, within rsfSat 4671.028 kb on + strand, within rsfSat 4671.028 kb on + strand, within rsfSat 4671.028 kb on + strand, within rsfSat 4671.028 kb on + strand, within rsfSat 4671.028 kb on + strand, within rsfSat 4671.272 kb on + strand, within rlmHat 4671.504 kb on + strand, within rlmHat 4671.541 kb on + strand, within rlmHat 4671.674 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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4,669,982 + +0.1
4,669,991 + +0.4
4,669,991 + -0.1
4,669,992 - -0.6
4,669,992 - +0.4
4,670,066 + +1.0
4,670,066 + +0.9
4,670,066 + +0.2
4,670,066 + -0.6
4,670,066 + +0.7
4,670,067 - -0.8
4,670,068 + -0.9
4,670,069 - +0.4
4,670,138 + cobC NOLOHH_23725 0.20 +0.1
4,670,138 + cobC NOLOHH_23725 0.20 -0.1
4,670,165 + cobC NOLOHH_23725 0.25 -0.9
4,670,166 - cobC NOLOHH_23725 0.25 +1.0
4,670,236 - cobC NOLOHH_23725 0.36 +0.9
4,670,236 - cobC NOLOHH_23725 0.36 +2.9
4,670,418 + cobC NOLOHH_23725 0.66 -0.3
4,670,435 - cobC NOLOHH_23725 0.69 +0.4
4,670,468 + cobC NOLOHH_23725 0.74 -0.6
4,670,492 + cobC NOLOHH_23725 0.78 +0.7
4,670,493 - cobC NOLOHH_23725 0.78 -1.9
4,670,514 + cobC NOLOHH_23725 0.82 -0.1
4,670,514 + cobC NOLOHH_23725 0.82 -0.1
4,670,515 - cobC NOLOHH_23725 0.82 -1.0
4,670,560 - cobC NOLOHH_23725 0.89 +1.0
4,670,725 + +0.3
4,670,837 + +0.3
4,670,837 + +0.2
4,670,860 + +0.8
4,670,958 + rsfS NOLOHH_23730 0.23 +0.4
4,671,004 + rsfS NOLOHH_23730 0.37 +1.3
4,671,028 + rsfS NOLOHH_23730 0.45 +1.4
4,671,028 + rsfS NOLOHH_23730 0.45 +1.4
4,671,028 + rsfS NOLOHH_23730 0.45 -0.1
4,671,028 + rsfS NOLOHH_23730 0.45 -0.4
4,671,028 + rsfS NOLOHH_23730 0.45 +1.0
4,671,272 + rlmH NOLOHH_23735 0.14 +0.4
4,671,504 + rlmH NOLOHH_23735 0.64 +0.4
4,671,541 + rlmH NOLOHH_23735 0.72 +1.6
4,671,674 + -0.8

Or see this region's nucleotide sequence