Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadD and cobC are separated by 23 nucleotides cobC and rsfS are separated by 259 nucleotides rsfS and rlmH are separated by 3 nucleotides rlmH and mrdA are separated by 30 nucleotides
NOLOHH_23720: nadD - nicotinate-nucleotide adenylyltransferase, at 4,669,349 to 4,669,990
nadD
NOLOHH_23725: cobC - adenosylcobalamin/alpha-ribazole phosphatase, at 4,670,014 to 4,670,625
cobC
NOLOHH_23730: rsfS - ribosome silencing factor, at 4,670,885 to 4,671,202
rsfS
NOLOHH_23735: rlmH - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 4,671,206 to 4,671,673
rlmH
NOLOHH_23740: mrdA - peptidoglycan DD-transpeptidase MrdA, at 4,671,704 to 4,673,605
mrdA
Position (kb)
4670
4671
4672 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4669.982 kb on + strand at 4669.991 kb on + strand at 4669.991 kb on + strand at 4669.992 kb on - strand at 4669.992 kb on - strand at 4670.066 kb on + strand at 4670.066 kb on + strand at 4670.066 kb on + strand at 4670.066 kb on + strand at 4670.066 kb on + strand at 4670.067 kb on - strand at 4670.068 kb on + strand at 4670.069 kb on - strand at 4670.138 kb on + strand, within cobC at 4670.138 kb on + strand, within cobC at 4670.165 kb on + strand, within cobC at 4670.166 kb on - strand, within cobC at 4670.236 kb on - strand, within cobC at 4670.236 kb on - strand, within cobC at 4670.418 kb on + strand, within cobC at 4670.435 kb on - strand, within cobC at 4670.468 kb on + strand, within cobC at 4670.492 kb on + strand, within cobC at 4670.493 kb on - strand, within cobC at 4670.514 kb on + strand, within cobC at 4670.514 kb on + strand, within cobC at 4670.515 kb on - strand, within cobC at 4670.560 kb on - strand, within cobC at 4670.725 kb on + strand at 4670.837 kb on + strand at 4670.837 kb on + strand at 4670.860 kb on + strand at 4670.958 kb on + strand, within rsfS at 4671.004 kb on + strand, within rsfS at 4671.028 kb on + strand, within rsfS at 4671.028 kb on + strand, within rsfS at 4671.028 kb on + strand, within rsfS at 4671.028 kb on + strand, within rsfS at 4671.028 kb on + strand, within rsfS at 4671.272 kb on + strand, within rlmH at 4671.504 kb on + strand, within rlmH at 4671.541 kb on + strand, within rlmH at 4671.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 4,669,982 + +0.1 4,669,991 + +0.4 4,669,991 + -0.1 4,669,992 - -0.6 4,669,992 - +0.4 4,670,066 + +1.0 4,670,066 + +0.9 4,670,066 + +0.2 4,670,066 + -0.6 4,670,066 + +0.7 4,670,067 - -0.8 4,670,068 + -0.9 4,670,069 - +0.4 4,670,138 + cobC NOLOHH_23725 0.20 +0.1 4,670,138 + cobC NOLOHH_23725 0.20 -0.1 4,670,165 + cobC NOLOHH_23725 0.25 -0.9 4,670,166 - cobC NOLOHH_23725 0.25 +1.0 4,670,236 - cobC NOLOHH_23725 0.36 +0.9 4,670,236 - cobC NOLOHH_23725 0.36 +2.9 4,670,418 + cobC NOLOHH_23725 0.66 -0.3 4,670,435 - cobC NOLOHH_23725 0.69 +0.4 4,670,468 + cobC NOLOHH_23725 0.74 -0.6 4,670,492 + cobC NOLOHH_23725 0.78 +0.7 4,670,493 - cobC NOLOHH_23725 0.78 -1.9 4,670,514 + cobC NOLOHH_23725 0.82 -0.1 4,670,514 + cobC NOLOHH_23725 0.82 -0.1 4,670,515 - cobC NOLOHH_23725 0.82 -1.0 4,670,560 - cobC NOLOHH_23725 0.89 +1.0 4,670,725 + +0.3 4,670,837 + +0.3 4,670,837 + +0.2 4,670,860 + +0.8 4,670,958 + rsfS NOLOHH_23730 0.23 +0.4 4,671,004 + rsfS NOLOHH_23730 0.37 +1.3 4,671,028 + rsfS NOLOHH_23730 0.45 +1.4 4,671,028 + rsfS NOLOHH_23730 0.45 +1.4 4,671,028 + rsfS NOLOHH_23730 0.45 -0.1 4,671,028 + rsfS NOLOHH_23730 0.45 -0.4 4,671,028 + rsfS NOLOHH_23730 0.45 +1.0 4,671,272 + rlmH NOLOHH_23735 0.14 +0.4 4,671,504 + rlmH NOLOHH_23735 0.64 +0.4 4,671,541 + rlmH NOLOHH_23735 0.72 +1.6 4,671,674 + -0.8
Or see this region's nucleotide sequence