Strain Fitness in Escherichia coli ECOR27 around NOLOHH_23620

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntybeZ and ybeY overlap by 4 nucleotidesybeY and corC are separated by 89 nucleotidescorC and lnt are separated by 24 nucleotides NOLOHH_23610: ybeZ - PhoH-like protein, at 4,645,691 to 4,646,770 ybeZ NOLOHH_23615: ybeY - rRNA maturation RNase YbeY, at 4,646,767 to 4,647,234 ybeY NOLOHH_23620: corC - CNNM family magnesium/cobalt transport protein CorC, at 4,647,324 to 4,648,202 corC NOLOHH_23625: lnt - apolipoprotein N-acyltransferase, at 4,648,227 to 4,649,765 lnt Position (kb) 4647 4648 4649Strain fitness (log2 ratio) -2 -1 0 1 2at 4646.327 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.563 kb on + strand, within ybeZat 4646.569 kb on + strand, within ybeZat 4646.580 kb on + strand, within ybeZat 4646.580 kb on + strand, within ybeZat 4646.626 kb on + strand, within ybeZat 4647.214 kb on + strandat 4647.214 kb on + strandat 4647.214 kb on + strandat 4647.300 kb on + strandat 4647.300 kb on + strandat 4647.300 kb on + strandat 4647.300 kb on + strandat 4647.300 kb on + strandat 4647.698 kb on + strand, within corCat 4647.767 kb on + strand, within corCat 4647.909 kb on + strand, within corCat 4647.909 kb on + strand, within corCat 4648.091 kb on + strand, within corCat 4648.142 kb on + strandat 4648.142 kb on + strandat 4648.145 kb on + strandat 4648.145 kb on + strandat 4648.200 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
4,646,327 + ybeZ NOLOHH_23610 0.59 -0.5
4,646,411 + ybeZ NOLOHH_23610 0.67 -0.1
4,646,411 + ybeZ NOLOHH_23610 0.67 -0.8
4,646,411 + ybeZ NOLOHH_23610 0.67 +1.5
4,646,411 + ybeZ NOLOHH_23610 0.67 +0.0
4,646,411 + ybeZ NOLOHH_23610 0.67 -0.7
4,646,411 + ybeZ NOLOHH_23610 0.67 +1.4
4,646,411 + ybeZ NOLOHH_23610 0.67 +0.4
4,646,563 + ybeZ NOLOHH_23610 0.81 -2.0
4,646,569 + ybeZ NOLOHH_23610 0.81 -0.6
4,646,580 + ybeZ NOLOHH_23610 0.82 -0.1
4,646,580 + ybeZ NOLOHH_23610 0.82 +0.2
4,646,626 + ybeZ NOLOHH_23610 0.87 +0.3
4,647,214 + +1.0
4,647,214 + +0.4
4,647,214 + -0.2
4,647,300 + +0.8
4,647,300 + +0.9
4,647,300 + +1.0
4,647,300 + +1.4
4,647,300 + +0.3
4,647,698 + corC NOLOHH_23620 0.43 -0.1
4,647,767 + corC NOLOHH_23620 0.50 +1.1
4,647,909 + corC NOLOHH_23620 0.67 +1.3
4,647,909 + corC NOLOHH_23620 0.67 +0.0
4,648,091 + corC NOLOHH_23620 0.87 -1.4
4,648,142 + -0.1
4,648,142 + -0.0
4,648,145 + +0.4
4,648,145 + +0.9
4,648,200 + +2.0

Or see this region's nucleotide sequence