Strain Fitness in Escherichia coli ECOR27 around NOLOHH_23605

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntubiF and miaB are separated by 145 nucleotidesmiaB and ybeZ are separated by 113 nucleotides NOLOHH_23600: ubiF - 3-demethoxyubiquinol 3-hydroxylase, at 4,642,832 to 4,644,007 ubiF NOLOHH_23605: miaB - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 4,644,153 to 4,645,577 miaB NOLOHH_23610: ybeZ - PhoH-like protein, at 4,645,691 to 4,646,770 ybeZ Position (kb) 4644 4645 4646Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4644.030 kb on - strandat 4644.030 kb on - strandat 4644.030 kb on - strandat 4644.037 kb on - strandat 4644.037 kb on - strandat 4644.079 kb on - strandat 4644.079 kb on - strandat 4644.104 kb on + strandat 4644.104 kb on + strandat 4644.104 kb on + strandat 4644.105 kb on - strandat 4644.105 kb on - strandat 4644.105 kb on - strandat 4644.105 kb on - strandat 4644.105 kb on - strandat 4644.109 kb on + strandat 4644.133 kb on + strandat 4644.133 kb on + strandat 4644.171 kb on - strandat 4644.359 kb on - strand, within miaBat 4644.444 kb on + strand, within miaBat 4644.445 kb on - strand, within miaBat 4644.529 kb on + strand, within miaBat 4644.534 kb on - strand, within miaBat 4644.627 kb on - strand, within miaBat 4644.630 kb on + strand, within miaBat 4644.630 kb on + strand, within miaBat 4644.630 kb on + strand, within miaBat 4644.631 kb on - strand, within miaBat 4644.655 kb on - strand, within miaBat 4644.860 kb on + strand, within miaBat 4644.860 kb on + strand, within miaBat 4645.152 kb on + strand, within miaBat 4645.161 kb on - strand, within miaBat 4645.181 kb on + strand, within miaBat 4645.239 kb on + strand, within miaBat 4645.240 kb on - strand, within miaBat 4645.242 kb on - strand, within miaBat 4645.256 kb on + strand, within miaBat 4645.257 kb on - strand, within miaBat 4645.257 kb on - strand, within miaBat 4645.257 kb on - strand, within miaBat 4645.311 kb on - strand, within miaBat 4645.311 kb on - strand, within miaBat 4645.325 kb on + strand, within miaBat 4645.325 kb on + strand, within miaBat 4645.325 kb on + strand, within miaBat 4645.325 kb on + strand, within miaBat 4645.326 kb on - strand, within miaBat 4645.334 kb on + strand, within miaBat 4645.335 kb on - strand, within miaBat 4645.335 kb on - strand, within miaBat 4645.475 kb on + strandat 4645.566 kb on + strandat 4645.566 kb on + strandat 4645.576 kb on - strandat 4645.680 kb on + strandat 4645.711 kb on + strandat 4645.717 kb on + strandat 4645.928 kb on + strand, within ybeZat 4646.079 kb on + strand, within ybeZat 4646.111 kb on + strand, within ybeZat 4646.111 kb on + strand, within ybeZat 4646.111 kb on + strand, within ybeZat 4646.140 kb on + strand, within ybeZat 4646.140 kb on + strand, within ybeZat 4646.177 kb on + strand, within ybeZat 4646.177 kb on + strand, within ybeZat 4646.177 kb on + strand, within ybeZat 4646.292 kb on + strand, within ybeZat 4646.327 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.411 kb on + strand, within ybeZat 4646.563 kb on + strand, within ybeZat 4646.569 kb on + strand, within ybeZ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
4,644,030 - +1.1
4,644,030 - +0.2
4,644,030 - +1.0
4,644,037 - +0.1
4,644,037 - -0.2
4,644,079 - +2.0
4,644,079 - -0.6
4,644,104 + +2.8
4,644,104 + +1.1
4,644,104 + -1.3
4,644,105 - +2.0
4,644,105 - -1.9
4,644,105 - +0.1
4,644,105 - +2.8
4,644,105 - +0.9
4,644,109 + +1.1
4,644,133 + +0.1
4,644,133 + -1.1
4,644,171 - +0.8
4,644,359 - miaB NOLOHH_23605 0.14 -0.4
4,644,444 + miaB NOLOHH_23605 0.20 -1.9
4,644,445 - miaB NOLOHH_23605 0.20 +0.1
4,644,529 + miaB NOLOHH_23605 0.26 -1.1
4,644,534 - miaB NOLOHH_23605 0.27 -1.4
4,644,627 - miaB NOLOHH_23605 0.33 +0.4
4,644,630 + miaB NOLOHH_23605 0.33 -1.4
4,644,630 + miaB NOLOHH_23605 0.33 +0.9
4,644,630 + miaB NOLOHH_23605 0.33 +0.4
4,644,631 - miaB NOLOHH_23605 0.34 +0.2
4,644,655 - miaB NOLOHH_23605 0.35 -0.8
4,644,860 + miaB NOLOHH_23605 0.50 -1.6
4,644,860 + miaB NOLOHH_23605 0.50 -1.9
4,645,152 + miaB NOLOHH_23605 0.70 +0.1
4,645,161 - miaB NOLOHH_23605 0.71 -0.1
4,645,181 + miaB NOLOHH_23605 0.72 -0.1
4,645,239 + miaB NOLOHH_23605 0.76 -0.7
4,645,240 - miaB NOLOHH_23605 0.76 -0.2
4,645,242 - miaB NOLOHH_23605 0.76 -1.1
4,645,256 + miaB NOLOHH_23605 0.77 +2.0
4,645,257 - miaB NOLOHH_23605 0.77 +0.4
4,645,257 - miaB NOLOHH_23605 0.77 +1.4
4,645,257 - miaB NOLOHH_23605 0.77 -1.9
4,645,311 - miaB NOLOHH_23605 0.81 +0.4
4,645,311 - miaB NOLOHH_23605 0.81 -1.6
4,645,325 + miaB NOLOHH_23605 0.82 +0.4
4,645,325 + miaB NOLOHH_23605 0.82 -0.2
4,645,325 + miaB NOLOHH_23605 0.82 +0.1
4,645,325 + miaB NOLOHH_23605 0.82 -0.3
4,645,326 - miaB NOLOHH_23605 0.82 -1.1
4,645,334 + miaB NOLOHH_23605 0.83 +0.3
4,645,335 - miaB NOLOHH_23605 0.83 +1.2
4,645,335 - miaB NOLOHH_23605 0.83 +2.8
4,645,475 + +2.8
4,645,566 + +0.4
4,645,566 + -0.9
4,645,576 - -1.1
4,645,680 + -0.0
4,645,711 + -0.3
4,645,717 + +0.9
4,645,928 + ybeZ NOLOHH_23610 0.22 +0.1
4,646,079 + ybeZ NOLOHH_23610 0.36 -0.3
4,646,111 + ybeZ NOLOHH_23610 0.39 -0.9
4,646,111 + ybeZ NOLOHH_23610 0.39 +0.4
4,646,111 + ybeZ NOLOHH_23610 0.39 +1.4
4,646,140 + ybeZ NOLOHH_23610 0.42 +0.8
4,646,140 + ybeZ NOLOHH_23610 0.42 +0.7
4,646,177 + ybeZ NOLOHH_23610 0.45 -0.7
4,646,177 + ybeZ NOLOHH_23610 0.45 +0.0
4,646,177 + ybeZ NOLOHH_23610 0.45 +0.9
4,646,292 + ybeZ NOLOHH_23610 0.56 -0.2
4,646,327 + ybeZ NOLOHH_23610 0.59 -0.5
4,646,411 + ybeZ NOLOHH_23610 0.67 -0.1
4,646,411 + ybeZ NOLOHH_23610 0.67 -0.8
4,646,411 + ybeZ NOLOHH_23610 0.67 +1.5
4,646,411 + ybeZ NOLOHH_23610 0.67 +0.0
4,646,411 + ybeZ NOLOHH_23610 0.67 -0.7
4,646,411 + ybeZ NOLOHH_23610 0.67 +1.4
4,646,411 + ybeZ NOLOHH_23610 0.67 +0.4
4,646,563 + ybeZ NOLOHH_23610 0.81 -2.0
4,646,569 + ybeZ NOLOHH_23610 0.81 -0.6

Or see this region's nucleotide sequence