Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_23030 and NOLOHH_23035 are separated by 342 nucleotides NOLOHH_23035 and NOLOHH_23040 are separated by 157 nucleotides NOLOHH_23040 and NOLOHH_23045 overlap by 4 nucleotides NOLOHH_23045 and NOLOHH_23050 are separated by 1 nucleotides NOLOHH_23050 and NOLOHH_23055 overlap by 4 nucleotides
NOLOHH_23030: NOLOHH_23030 - siphovirus Gp157 family protein, at 4,532,020 to 4,532,502
_23030
NOLOHH_23035: NOLOHH_23035 - DUF5405 domain-containing protein, at 4,532,845 to 4,533,126
_23035
NOLOHH_23040: NOLOHH_23040 - hypothetical protein, at 4,533,284 to 4,533,877
_23040
NOLOHH_23045: NOLOHH_23045 - hypothetical protein, at 4,533,874 to 4,534,113
_23045
NOLOHH_23050: NOLOHH_23050 - Ead/Ea22-like protein, at 4,534,115 to 4,534,630
_23050
NOLOHH_23055: NOLOHH_23055 - DUF550 domain-containing protein, at 4,534,627 to 4,535,343
_23055
Position (kb) 4533
4534 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4532.514 kb on - strand at 4533.005 kb on + strand, within NOLOHH_23035 at 4533.006 kb on - strand, within NOLOHH_23035 at 4533.074 kb on + strand, within NOLOHH_23035 at 4533.300 kb on + strand at 4533.374 kb on + strand, within NOLOHH_23040 at 4533.454 kb on + strand, within NOLOHH_23040 at 4533.454 kb on + strand, within NOLOHH_23040 at 4533.475 kb on + strand, within NOLOHH_23040 at 4533.548 kb on - strand, within NOLOHH_23040 at 4533.548 kb on - strand, within NOLOHH_23040 at 4533.562 kb on + strand, within NOLOHH_23040 at 4533.654 kb on - strand, within NOLOHH_23040 at 4533.656 kb on + strand, within NOLOHH_23040 at 4533.657 kb on - strand, within NOLOHH_23040 at 4533.775 kb on + strand, within NOLOHH_23040 at 4533.775 kb on + strand, within NOLOHH_23040 at 4533.821 kb on - strand at 4533.821 kb on - strand at 4533.837 kb on + strand at 4533.837 kb on + strand at 4533.839 kb on + strand at 4533.938 kb on + strand, within NOLOHH_23045 at 4533.997 kb on + strand, within NOLOHH_23045 at 4533.998 kb on - strand, within NOLOHH_23045 at 4534.088 kb on + strand, within NOLOHH_23045 at 4534.151 kb on + strand at 4534.201 kb on + strand, within NOLOHH_23050 at 4534.201 kb on + strand, within NOLOHH_23050 at 4534.203 kb on + strand, within NOLOHH_23050 at 4534.203 kb on + strand, within NOLOHH_23050 at 4534.203 kb on + strand, within NOLOHH_23050 at 4534.204 kb on - strand, within NOLOHH_23050 at 4534.307 kb on - strand, within NOLOHH_23050 at 4534.381 kb on + strand, within NOLOHH_23050 at 4534.416 kb on + strand, within NOLOHH_23050 at 4534.416 kb on + strand, within NOLOHH_23050 at 4534.449 kb on + strand, within NOLOHH_23050 at 4534.513 kb on + strand, within NOLOHH_23050 at 4534.576 kb on + strand, within NOLOHH_23050 at 4534.584 kb on + strand at 4534.584 kb on + strand at 4534.585 kb on - strand at 4534.586 kb on + strand at 4534.586 kb on + strand at 4534.596 kb on + strand at 4534.596 kb on + strand at 4534.606 kb on + strand at 4534.606 kb on + strand at 4534.635 kb on + strand at 4534.681 kb on + strand at 4534.692 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 4,532,514 - -0.9 4,533,005 + NOLOHH_23035 0.57 +0.4 4,533,006 - NOLOHH_23035 0.57 -1.4 4,533,074 + NOLOHH_23035 0.81 -0.7 4,533,300 + +0.2 4,533,374 + NOLOHH_23040 0.15 +0.2 4,533,454 + NOLOHH_23040 0.29 +0.4 4,533,454 + NOLOHH_23040 0.29 +0.4 4,533,475 + NOLOHH_23040 0.32 -2.2 4,533,548 - NOLOHH_23040 0.44 -1.6 4,533,548 - NOLOHH_23040 0.44 -0.7 4,533,562 + NOLOHH_23040 0.47 -0.6 4,533,654 - NOLOHH_23040 0.62 +2.0 4,533,656 + NOLOHH_23040 0.63 +1.0 4,533,657 - NOLOHH_23040 0.63 -0.6 4,533,775 + NOLOHH_23040 0.83 +0.0 4,533,775 + NOLOHH_23040 0.83 -0.9 4,533,821 - +1.2 4,533,821 - -1.6 4,533,837 + -1.0 4,533,837 + +0.9 4,533,839 + -0.2 4,533,938 + NOLOHH_23045 0.27 -1.2 4,533,997 + NOLOHH_23045 0.51 +1.0 4,533,998 - NOLOHH_23045 0.52 -0.8 4,534,088 + NOLOHH_23045 0.89 +0.1 4,534,151 + +0.4 4,534,201 + NOLOHH_23050 0.17 +0.6 4,534,201 + NOLOHH_23050 0.17 -0.6 4,534,203 + NOLOHH_23050 0.17 -2.0 4,534,203 + NOLOHH_23050 0.17 +0.2 4,534,203 + NOLOHH_23050 0.17 +1.4 4,534,204 - NOLOHH_23050 0.17 -0.3 4,534,307 - NOLOHH_23050 0.37 -0.6 4,534,381 + NOLOHH_23050 0.52 -0.1 4,534,416 + NOLOHH_23050 0.58 +0.2 4,534,416 + NOLOHH_23050 0.58 +0.4 4,534,449 + NOLOHH_23050 0.65 +0.8 4,534,513 + NOLOHH_23050 0.77 -0.2 4,534,576 + NOLOHH_23050 0.89 +0.4 4,534,584 + -1.2 4,534,584 + -1.8 4,534,585 - +0.4 4,534,586 + -0.7 4,534,586 + +0.1 4,534,596 + -0.7 4,534,596 + -1.0 4,534,606 + +0.1 4,534,606 + -1.2 4,534,635 + -0.3 4,534,681 + +1.0 4,534,692 + +0.0
Or see this region's nucleotide sequence