Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ninH and ninG overlap by 4 nucleotides ninG and NOLOHH_22915 overlap by 1 nucleotides NOLOHH_22915 and NOLOHH_22920 overlap by 8 nucleotides NOLOHH_22920 and NOLOHH_22925 overlap by 8 nucleotides NOLOHH_22925 and NOLOHH_22930 are separated by 175 nucleotides
NOLOHH_22905: ninH - Protein ninH, at 4,520,432 to 4,520,638
ninH
NOLOHH_22910: ninG - Protein ninG, at 4,520,635 to 4,521,246
ninG
NOLOHH_22915: NOLOHH_22915 - hypothetical protein, at 4,521,246 to 4,521,515
_22915
NOLOHH_22920: NOLOHH_22920 - protein ninF, at 4,521,508 to 4,521,684
_22920
NOLOHH_22925: NOLOHH_22925 - Bacteriophage P22, NinX, at 4,521,677 to 4,522,036
_22925
NOLOHH_22930: NOLOHH_22930 - phage N-6-adenine-methyltransferase, at 4,522,212 to 4,522,739
_22930
Position (kb) 4521
4522 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4520.522 kb on - strand, within ninH at 4520.532 kb on + strand, within ninH at 4520.533 kb on - strand, within ninH at 4520.533 kb on - strand, within ninH at 4520.554 kb on + strand, within ninH at 4520.555 kb on - strand, within ninH at 4520.573 kb on + strand, within ninH at 4520.626 kb on - strand at 4520.656 kb on - strand at 4520.656 kb on - strand at 4520.818 kb on - strand, within ninG at 4520.818 kb on - strand, within ninG at 4520.943 kb on + strand, within ninG at 4520.943 kb on + strand, within ninG at 4520.944 kb on - strand, within ninG at 4520.944 kb on - strand, within ninG at 4520.950 kb on + strand, within ninG at 4520.950 kb on + strand, within ninG at 4520.950 kb on + strand, within ninG at 4521.052 kb on - strand, within ninG at 4521.140 kb on - strand, within ninG at 4521.368 kb on + strand, within NOLOHH_22915 at 4521.369 kb on - strand, within NOLOHH_22915 at 4521.369 kb on - strand, within NOLOHH_22915 at 4521.369 kb on - strand, within NOLOHH_22915 at 4521.370 kb on + strand, within NOLOHH_22915 at 4521.371 kb on - strand, within NOLOHH_22915 at 4521.371 kb on - strand, within NOLOHH_22915 at 4521.398 kb on + strand, within NOLOHH_22915 at 4521.446 kb on - strand, within NOLOHH_22915 at 4521.531 kb on - strand, within NOLOHH_22920 at 4521.531 kb on - strand, within NOLOHH_22920 at 4521.685 kb on + strand at 4521.686 kb on - strand at 4522.020 kb on - strand at 4522.030 kb on - strand at 4522.060 kb on + strand at 4522.060 kb on + strand at 4522.061 kb on - strand at 4522.105 kb on + strand at 4522.163 kb on + strand at 4522.183 kb on + strand at 4522.183 kb on + strand at 4522.183 kb on + strand at 4522.269 kb on - strand, within NOLOHH_22930 at 4522.442 kb on + strand, within NOLOHH_22930 at 4522.460 kb on + strand, within NOLOHH_22930 at 4522.460 kb on + strand, within NOLOHH_22930 at 4522.461 kb on - strand, within NOLOHH_22930 at 4522.461 kb on - strand, within NOLOHH_22930 at 4522.461 kb on - strand, within NOLOHH_22930 at 4522.461 kb on - strand, within NOLOHH_22930 at 4522.461 kb on - strand, within NOLOHH_22930 at 4522.482 kb on + strand, within NOLOHH_22930 at 4522.482 kb on + strand, within NOLOHH_22930 at 4522.482 kb on + strand, within NOLOHH_22930 at 4522.483 kb on - strand, within NOLOHH_22930 at 4522.483 kb on - strand, within NOLOHH_22930 at 4522.538 kb on + strand, within NOLOHH_22930 at 4522.539 kb on - strand, within NOLOHH_22930 at 4522.561 kb on - strand, within NOLOHH_22930
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 4,520,522 - ninH NOLOHH_22905 0.43 +1.1 4,520,532 + ninH NOLOHH_22905 0.48 +0.2 4,520,533 - ninH NOLOHH_22905 0.49 +1.4 4,520,533 - ninH NOLOHH_22905 0.49 +0.0 4,520,554 + ninH NOLOHH_22905 0.59 -0.6 4,520,555 - ninH NOLOHH_22905 0.59 -4.0 4,520,573 + ninH NOLOHH_22905 0.68 +0.4 4,520,626 - +0.4 4,520,656 - -2.9 4,520,656 - -3.5 4,520,818 - ninG NOLOHH_22910 0.30 -1.0 4,520,818 - ninG NOLOHH_22910 0.30 -1.1 4,520,943 + ninG NOLOHH_22910 0.50 +1.0 4,520,943 + ninG NOLOHH_22910 0.50 +2.0 4,520,944 - ninG NOLOHH_22910 0.50 +0.4 4,520,944 - ninG NOLOHH_22910 0.50 -0.1 4,520,950 + ninG NOLOHH_22910 0.51 +0.4 4,520,950 + ninG NOLOHH_22910 0.51 -0.9 4,520,950 + ninG NOLOHH_22910 0.51 -2.7 4,521,052 - ninG NOLOHH_22910 0.68 -1.1 4,521,140 - ninG NOLOHH_22910 0.83 -0.6 4,521,368 + NOLOHH_22915 0.45 +0.6 4,521,369 - NOLOHH_22915 0.46 +0.4 4,521,369 - NOLOHH_22915 0.46 +0.7 4,521,369 - NOLOHH_22915 0.46 +0.0 4,521,370 + NOLOHH_22915 0.46 +2.0 4,521,371 - NOLOHH_22915 0.46 +0.0 4,521,371 - NOLOHH_22915 0.46 +0.9 4,521,398 + NOLOHH_22915 0.56 +0.1 4,521,446 - NOLOHH_22915 0.74 -2.7 4,521,531 - NOLOHH_22920 0.13 -0.4 4,521,531 - NOLOHH_22920 0.13 +0.4 4,521,685 + -2.1 4,521,686 - +0.0 4,522,020 - -1.6 4,522,030 - -1.9 4,522,060 + -0.6 4,522,060 + -0.9 4,522,061 - -0.6 4,522,105 + +0.4 4,522,163 + +0.6 4,522,183 + -0.6 4,522,183 + -0.4 4,522,183 + +1.3 4,522,269 - NOLOHH_22930 0.11 -0.6 4,522,442 + NOLOHH_22930 0.44 +1.7 4,522,460 + NOLOHH_22930 0.47 -1.0 4,522,460 + NOLOHH_22930 0.47 -1.4 4,522,461 - NOLOHH_22930 0.47 +0.4 4,522,461 - NOLOHH_22930 0.47 -0.8 4,522,461 - NOLOHH_22930 0.47 -0.3 4,522,461 - NOLOHH_22930 0.47 -0.6 4,522,461 - NOLOHH_22930 0.47 +0.9 4,522,482 + NOLOHH_22930 0.51 -0.8 4,522,482 + NOLOHH_22930 0.51 -1.1 4,522,482 + NOLOHH_22930 0.51 -1.1 4,522,483 - NOLOHH_22930 0.51 -0.7 4,522,483 - NOLOHH_22930 0.51 -0.4 4,522,538 + NOLOHH_22930 0.62 +0.4 4,522,539 - NOLOHH_22930 0.62 -1.9 4,522,561 - NOLOHH_22930 0.66 +0.2
Or see this region's nucleotide sequence