Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22910

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_22895 and NOLOHH_22900 overlap by 10 nucleotidesNOLOHH_22900 and ninH overlap by 23 nucleotidesninH and ninG overlap by 4 nucleotidesninG and NOLOHH_22915 overlap by 1 nucleotidesNOLOHH_22915 and NOLOHH_22920 overlap by 8 nucleotidesNOLOHH_22920 and NOLOHH_22925 overlap by 8 nucleotidesNOLOHH_22925 and NOLOHH_22930 are separated by 175 nucleotides NOLOHH_22895: NOLOHH_22895 - antiterminator, at 4,519,274 to 4,519,792 _22895 NOLOHH_22900: NOLOHH_22900 - Serine/threonine-protein phosphatase, at 4,519,783 to 4,520,454 _22900 NOLOHH_22905: ninH - Protein ninH, at 4,520,432 to 4,520,638 ninH NOLOHH_22910: ninG - Protein ninG, at 4,520,635 to 4,521,246 ninG NOLOHH_22915: NOLOHH_22915 - hypothetical protein, at 4,521,246 to 4,521,515 _22915 NOLOHH_22920: NOLOHH_22920 - protein ninF, at 4,521,508 to 4,521,684 _22920 NOLOHH_22925: NOLOHH_22925 - Bacteriophage P22, NinX, at 4,521,677 to 4,522,036 _22925 NOLOHH_22930: NOLOHH_22930 - phage N-6-adenine-methyltransferase, at 4,522,212 to 4,522,739 _22930 Position (kb) 4520 4521 4522Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4519.652 kb on + strand, within NOLOHH_22895at 4519.653 kb on - strand, within NOLOHH_22895at 4519.677 kb on - strand, within NOLOHH_22895at 4519.776 kb on - strandat 4519.776 kb on - strandat 4519.785 kb on - strandat 4519.785 kb on - strandat 4519.807 kb on + strandat 4519.807 kb on + strandat 4519.808 kb on - strandat 4519.808 kb on - strandat 4519.854 kb on + strand, within NOLOHH_22900at 4519.856 kb on + strand, within NOLOHH_22900at 4519.856 kb on + strand, within NOLOHH_22900at 4519.856 kb on + strand, within NOLOHH_22900at 4519.856 kb on + strand, within NOLOHH_22900at 4519.856 kb on + strand, within NOLOHH_22900at 4519.857 kb on - strand, within NOLOHH_22900at 4519.857 kb on - strand, within NOLOHH_22900at 4519.857 kb on - strand, within NOLOHH_22900at 4519.857 kb on - strand, within NOLOHH_22900at 4519.857 kb on - strand, within NOLOHH_22900at 4519.857 kb on - strand, within NOLOHH_22900at 4519.897 kb on - strand, within NOLOHH_22900at 4520.239 kb on + strand, within NOLOHH_22900at 4520.239 kb on + strand, within NOLOHH_22900at 4520.239 kb on + strand, within NOLOHH_22900at 4520.239 kb on + strand, within NOLOHH_22900at 4520.240 kb on - strand, within NOLOHH_22900at 4520.266 kb on + strand, within NOLOHH_22900at 4520.267 kb on - strand, within NOLOHH_22900at 4520.323 kb on - strand, within NOLOHH_22900at 4520.323 kb on - strand, within NOLOHH_22900at 4520.445 kb on - strandat 4520.522 kb on - strand, within ninHat 4520.532 kb on + strand, within ninHat 4520.533 kb on - strand, within ninHat 4520.533 kb on - strand, within ninHat 4520.554 kb on + strand, within ninHat 4520.555 kb on - strand, within ninHat 4520.573 kb on + strand, within ninHat 4520.626 kb on - strandat 4520.656 kb on - strandat 4520.656 kb on - strandat 4520.818 kb on - strand, within ninGat 4520.818 kb on - strand, within ninGat 4520.943 kb on + strand, within ninGat 4520.943 kb on + strand, within ninGat 4520.944 kb on - strand, within ninGat 4520.944 kb on - strand, within ninGat 4520.950 kb on + strand, within ninGat 4520.950 kb on + strand, within ninGat 4520.950 kb on + strand, within ninGat 4521.052 kb on - strand, within ninGat 4521.140 kb on - strand, within ninGat 4521.368 kb on + strand, within NOLOHH_22915at 4521.369 kb on - strand, within NOLOHH_22915at 4521.369 kb on - strand, within NOLOHH_22915at 4521.369 kb on - strand, within NOLOHH_22915at 4521.370 kb on + strand, within NOLOHH_22915at 4521.371 kb on - strand, within NOLOHH_22915at 4521.371 kb on - strand, within NOLOHH_22915at 4521.398 kb on + strand, within NOLOHH_22915at 4521.446 kb on - strand, within NOLOHH_22915at 4521.531 kb on - strand, within NOLOHH_22920at 4521.531 kb on - strand, within NOLOHH_22920at 4521.685 kb on + strandat 4521.686 kb on - strandat 4522.020 kb on - strandat 4522.030 kb on - strandat 4522.060 kb on + strandat 4522.060 kb on + strandat 4522.061 kb on - strandat 4522.105 kb on + strandat 4522.163 kb on + strandat 4522.183 kb on + strandat 4522.183 kb on + strandat 4522.183 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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4,519,652 + NOLOHH_22895 0.73 +1.4
4,519,653 - NOLOHH_22895 0.73 -1.1
4,519,677 - NOLOHH_22895 0.78 +0.1
4,519,776 - -0.1
4,519,776 - +0.0
4,519,785 - -1.4
4,519,785 - +0.7
4,519,807 + +0.4
4,519,807 + -1.4
4,519,808 - +0.1
4,519,808 - -0.3
4,519,854 + NOLOHH_22900 0.11 +0.4
4,519,856 + NOLOHH_22900 0.11 -2.6
4,519,856 + NOLOHH_22900 0.11 -0.1
4,519,856 + NOLOHH_22900 0.11 -1.7
4,519,856 + NOLOHH_22900 0.11 +0.8
4,519,856 + NOLOHH_22900 0.11 -0.6
4,519,857 - NOLOHH_22900 0.11 +0.4
4,519,857 - NOLOHH_22900 0.11 +0.8
4,519,857 - NOLOHH_22900 0.11 +0.2
4,519,857 - NOLOHH_22900 0.11 -0.1
4,519,857 - NOLOHH_22900 0.11 +1.0
4,519,857 - NOLOHH_22900 0.11 -0.2
4,519,897 - NOLOHH_22900 0.17 -2.1
4,520,239 + NOLOHH_22900 0.68 +1.0
4,520,239 + NOLOHH_22900 0.68 -0.6
4,520,239 + NOLOHH_22900 0.68 +0.8
4,520,239 + NOLOHH_22900 0.68 -0.4
4,520,240 - NOLOHH_22900 0.68 -0.3
4,520,266 + NOLOHH_22900 0.72 +1.8
4,520,267 - NOLOHH_22900 0.72 -1.3
4,520,323 - NOLOHH_22900 0.80 -0.4
4,520,323 - NOLOHH_22900 0.80 +2.4
4,520,445 - +0.4
4,520,522 - ninH NOLOHH_22905 0.43 +1.1
4,520,532 + ninH NOLOHH_22905 0.48 +0.2
4,520,533 - ninH NOLOHH_22905 0.49 +1.4
4,520,533 - ninH NOLOHH_22905 0.49 +0.0
4,520,554 + ninH NOLOHH_22905 0.59 -0.6
4,520,555 - ninH NOLOHH_22905 0.59 -4.0
4,520,573 + ninH NOLOHH_22905 0.68 +0.4
4,520,626 - +0.4
4,520,656 - -2.9
4,520,656 - -3.5
4,520,818 - ninG NOLOHH_22910 0.30 -1.0
4,520,818 - ninG NOLOHH_22910 0.30 -1.1
4,520,943 + ninG NOLOHH_22910 0.50 +1.0
4,520,943 + ninG NOLOHH_22910 0.50 +2.0
4,520,944 - ninG NOLOHH_22910 0.50 +0.4
4,520,944 - ninG NOLOHH_22910 0.50 -0.1
4,520,950 + ninG NOLOHH_22910 0.51 +0.4
4,520,950 + ninG NOLOHH_22910 0.51 -0.9
4,520,950 + ninG NOLOHH_22910 0.51 -2.7
4,521,052 - ninG NOLOHH_22910 0.68 -1.1
4,521,140 - ninG NOLOHH_22910 0.83 -0.6
4,521,368 + NOLOHH_22915 0.45 +0.6
4,521,369 - NOLOHH_22915 0.46 +0.4
4,521,369 - NOLOHH_22915 0.46 +0.7
4,521,369 - NOLOHH_22915 0.46 +0.0
4,521,370 + NOLOHH_22915 0.46 +2.0
4,521,371 - NOLOHH_22915 0.46 +0.0
4,521,371 - NOLOHH_22915 0.46 +0.9
4,521,398 + NOLOHH_22915 0.56 +0.1
4,521,446 - NOLOHH_22915 0.74 -2.7
4,521,531 - NOLOHH_22920 0.13 -0.4
4,521,531 - NOLOHH_22920 0.13 +0.4
4,521,685 + -2.1
4,521,686 - +0.0
4,522,020 - -1.6
4,522,030 - -1.9
4,522,060 + -0.6
4,522,060 + -0.9
4,522,061 - -0.6
4,522,105 + +0.4
4,522,163 + +0.6
4,522,183 + -0.6
4,522,183 + -0.4
4,522,183 + +1.3

Or see this region's nucleotide sequence