Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22845

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNOLOHH_22840 and NOLOHH_22845 are separated by 11 nucleotidesNOLOHH_22845 and NOLOHH_22850 are separated by 13 nucleotides NOLOHH_22840: NOLOHH_22840 - head protein, at 4,510,065 to 4,511,336 _22840 NOLOHH_22845: NOLOHH_22845 - phage capsid protein, at 4,511,348 to 4,512,232 _22845 NOLOHH_22850: NOLOHH_22850 - portal protein, at 4,512,246 to 4,514,336 _22850 Position (kb) 4511 4512 4513Strain fitness (log2 ratio) -2 -1 0 1 2at 4510.351 kb on - strand, within NOLOHH_22840at 4510.351 kb on - strand, within NOLOHH_22840at 4510.361 kb on - strand, within NOLOHH_22840at 4510.361 kb on - strand, within NOLOHH_22840at 4510.373 kb on + strand, within NOLOHH_22840at 4510.374 kb on - strand, within NOLOHH_22840at 4510.374 kb on - strand, within NOLOHH_22840at 4510.374 kb on - strand, within NOLOHH_22840at 4510.381 kb on + strand, within NOLOHH_22840at 4510.445 kb on + strand, within NOLOHH_22840at 4510.464 kb on - strand, within NOLOHH_22840at 4510.464 kb on - strand, within NOLOHH_22840at 4510.484 kb on - strand, within NOLOHH_22840at 4510.516 kb on + strand, within NOLOHH_22840at 4510.517 kb on - strand, within NOLOHH_22840at 4510.521 kb on - strand, within NOLOHH_22840at 4510.521 kb on - strand, within NOLOHH_22840at 4510.521 kb on - strand, within NOLOHH_22840at 4510.590 kb on + strand, within NOLOHH_22840at 4510.591 kb on - strand, within NOLOHH_22840at 4510.591 kb on - strand, within NOLOHH_22840at 4510.604 kb on - strand, within NOLOHH_22840at 4510.604 kb on - strand, within NOLOHH_22840at 4510.624 kb on + strand, within NOLOHH_22840at 4510.624 kb on + strand, within NOLOHH_22840at 4510.624 kb on + strand, within NOLOHH_22840at 4510.625 kb on - strand, within NOLOHH_22840at 4510.625 kb on - strand, within NOLOHH_22840at 4510.758 kb on - strand, within NOLOHH_22840at 4511.080 kb on + strand, within NOLOHH_22840at 4511.080 kb on + strand, within NOLOHH_22840at 4511.080 kb on + strand, within NOLOHH_22840at 4511.080 kb on + strand, within NOLOHH_22840at 4511.081 kb on - strand, within NOLOHH_22840at 4511.081 kb on - strand, within NOLOHH_22840at 4511.081 kb on - strand, within NOLOHH_22840at 4511.081 kb on - strand, within NOLOHH_22840at 4511.081 kb on - strand, within NOLOHH_22840at 4511.084 kb on + strand, within NOLOHH_22840at 4511.085 kb on - strand, within NOLOHH_22840at 4511.088 kb on + strand, within NOLOHH_22840at 4511.089 kb on - strand, within NOLOHH_22840at 4511.142 kb on - strand, within NOLOHH_22840at 4511.142 kb on - strand, within NOLOHH_22840at 4511.263 kb on - strandat 4511.339 kb on - strandat 4511.466 kb on - strand, within NOLOHH_22845at 4511.466 kb on - strand, within NOLOHH_22845at 4511.466 kb on - strand, within NOLOHH_22845at 4511.552 kb on - strand, within NOLOHH_22845at 4511.555 kb on + strand, within NOLOHH_22845at 4511.570 kb on + strand, within NOLOHH_22845at 4511.571 kb on - strand, within NOLOHH_22845at 4511.571 kb on - strand, within NOLOHH_22845at 4511.571 kb on - strand, within NOLOHH_22845at 4511.703 kb on - strand, within NOLOHH_22845at 4511.728 kb on - strand, within NOLOHH_22845at 4512.258 kb on + strandat 4512.312 kb on + strandat 4512.334 kb on - strandat 4512.383 kb on - strandat 4512.426 kb on - strandat 4512.426 kb on - strandat 4512.659 kb on + strand, within NOLOHH_22850at 4512.660 kb on - strand, within NOLOHH_22850at 4512.820 kb on - strand, within NOLOHH_22850at 4512.951 kb on + strand, within NOLOHH_22850at 4512.952 kb on - strand, within NOLOHH_22850at 4513.011 kb on - strand, within NOLOHH_22850at 4513.055 kb on + strand, within NOLOHH_22850at 4513.056 kb on - strand, within NOLOHH_22850at 4513.122 kb on + strand, within NOLOHH_22850at 4513.123 kb on - strand, within NOLOHH_22850at 4513.125 kb on + strand, within NOLOHH_22850at 4513.125 kb on + strand, within NOLOHH_22850at 4513.163 kb on + strand, within NOLOHH_22850at 4513.164 kb on - strand, within NOLOHH_22850at 4513.164 kb on - strand, within NOLOHH_22850at 4513.166 kb on - strand, within NOLOHH_22850at 4513.205 kb on + strand, within NOLOHH_22850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
4,510,351 - NOLOHH_22840 0.22 +0.6
4,510,351 - NOLOHH_22840 0.22 +1.3
4,510,361 - NOLOHH_22840 0.23 -1.3
4,510,361 - NOLOHH_22840 0.23 -0.6
4,510,373 + NOLOHH_22840 0.24 -0.7
4,510,374 - NOLOHH_22840 0.24 -1.1
4,510,374 - NOLOHH_22840 0.24 -0.6
4,510,374 - NOLOHH_22840 0.24 -0.3
4,510,381 + NOLOHH_22840 0.25 +0.2
4,510,445 + NOLOHH_22840 0.30 +1.4
4,510,464 - NOLOHH_22840 0.31 -0.3
4,510,464 - NOLOHH_22840 0.31 +1.4
4,510,484 - NOLOHH_22840 0.33 -1.4
4,510,516 + NOLOHH_22840 0.35 +0.4
4,510,517 - NOLOHH_22840 0.36 -1.6
4,510,521 - NOLOHH_22840 0.36 +0.2
4,510,521 - NOLOHH_22840 0.36 -0.6
4,510,521 - NOLOHH_22840 0.36 -0.2
4,510,590 + NOLOHH_22840 0.41 -2.1
4,510,591 - NOLOHH_22840 0.41 +0.6
4,510,591 - NOLOHH_22840 0.41 -0.0
4,510,604 - NOLOHH_22840 0.42 -1.4
4,510,604 - NOLOHH_22840 0.42 -0.9
4,510,624 + NOLOHH_22840 0.44 +0.4
4,510,624 + NOLOHH_22840 0.44 -0.3
4,510,624 + NOLOHH_22840 0.44 +1.0
4,510,625 - NOLOHH_22840 0.44 -0.3
4,510,625 - NOLOHH_22840 0.44 +0.2
4,510,758 - NOLOHH_22840 0.54 -0.1
4,511,080 + NOLOHH_22840 0.80 +0.4
4,511,080 + NOLOHH_22840 0.80 +0.9
4,511,080 + NOLOHH_22840 0.80 +1.0
4,511,080 + NOLOHH_22840 0.80 -0.9
4,511,081 - NOLOHH_22840 0.80 +0.4
4,511,081 - NOLOHH_22840 0.80 +1.3
4,511,081 - NOLOHH_22840 0.80 +0.4
4,511,081 - NOLOHH_22840 0.80 +0.1
4,511,081 - NOLOHH_22840 0.80 -1.7
4,511,084 + NOLOHH_22840 0.80 -1.6
4,511,085 - NOLOHH_22840 0.80 -0.8
4,511,088 + NOLOHH_22840 0.80 -1.3
4,511,089 - NOLOHH_22840 0.81 +2.0
4,511,142 - NOLOHH_22840 0.85 +0.0
4,511,142 - NOLOHH_22840 0.85 -1.6
4,511,263 - +2.3
4,511,339 - -0.3
4,511,466 - NOLOHH_22845 0.13 -1.1
4,511,466 - NOLOHH_22845 0.13 +1.4
4,511,466 - NOLOHH_22845 0.13 -1.1
4,511,552 - NOLOHH_22845 0.23 -0.6
4,511,555 + NOLOHH_22845 0.23 +2.0
4,511,570 + NOLOHH_22845 0.25 -1.1
4,511,571 - NOLOHH_22845 0.25 -0.3
4,511,571 - NOLOHH_22845 0.25 +0.1
4,511,571 - NOLOHH_22845 0.25 -1.6
4,511,703 - NOLOHH_22845 0.40 +1.0
4,511,728 - NOLOHH_22845 0.43 -0.1
4,512,258 + +1.0
4,512,312 + +2.0
4,512,334 - +1.4
4,512,383 - +2.0
4,512,426 - -2.0
4,512,426 - +0.4
4,512,659 + NOLOHH_22850 0.20 -0.8
4,512,660 - NOLOHH_22850 0.20 -1.1
4,512,820 - NOLOHH_22850 0.27 -0.6
4,512,951 + NOLOHH_22850 0.34 -1.1
4,512,952 - NOLOHH_22850 0.34 -1.6
4,513,011 - NOLOHH_22850 0.37 -0.1
4,513,055 + NOLOHH_22850 0.39 +0.4
4,513,056 - NOLOHH_22850 0.39 -1.7
4,513,122 + NOLOHH_22850 0.42 -1.9
4,513,123 - NOLOHH_22850 0.42 -2.1
4,513,125 + NOLOHH_22850 0.42 +0.1
4,513,125 + NOLOHH_22850 0.42 -1.1
4,513,163 + NOLOHH_22850 0.44 -0.6
4,513,164 - NOLOHH_22850 0.44 -2.1
4,513,164 - NOLOHH_22850 0.44 -1.1
4,513,166 - NOLOHH_22850 0.44 -2.1
4,513,205 + NOLOHH_22850 0.46 +0.7

Or see this region's nucleotide sequence