Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldtB and ybiR are separated by 58 nucleotides ybiR and mntR overlap by 4 nucleotides mntR and mntS are separated by 185 nucleotides
NOLOHH_22515: ldtB - L,D-transpeptidase, at 4,448,594 to 4,449,514
ldtB
NOLOHH_22520: ybiR - Inner membrane protein YbiR, at 4,449,573 to 4,450,691
ybiR
NOLOHH_22525: mntR - manganese-binding transcriptional regulator MntR, at 4,450,688 to 4,451,155
mntR
NOLOHH_22530: mntS - manganase accumulation protein MntS, at 4,451,341 to 4,451,469
mntS
Position (kb) 4449
4450
4451 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4448.600 kb on - strand at 4448.672 kb on + strand at 4448.756 kb on + strand, within ldtB at 4448.844 kb on + strand, within ldtB at 4448.844 kb on + strand, within ldtB at 4448.924 kb on + strand, within ldtB at 4448.924 kb on + strand, within ldtB at 4448.924 kb on + strand, within ldtB at 4448.924 kb on + strand, within ldtB at 4448.925 kb on - strand, within ldtB at 4448.927 kb on + strand, within ldtB at 4449.149 kb on + strand, within ldtB at 4449.149 kb on + strand, within ldtB at 4449.150 kb on - strand, within ldtB at 4449.164 kb on + strand, within ldtB at 4449.164 kb on + strand, within ldtB at 4449.210 kb on + strand, within ldtB at 4449.258 kb on + strand, within ldtB at 4449.293 kb on - strand, within ldtB at 4449.338 kb on + strand, within ldtB at 4449.340 kb on + strand, within ldtB at 4449.340 kb on + strand, within ldtB at 4449.340 kb on + strand, within ldtB at 4449.340 kb on + strand, within ldtB at 4449.406 kb on + strand, within ldtB at 4449.406 kb on + strand, within ldtB at 4449.407 kb on - strand, within ldtB at 4449.526 kb on + strand at 4449.575 kb on - strand at 4449.589 kb on - strand at 4449.591 kb on - strand at 4449.591 kb on - strand at 4449.591 kb on - strand at 4449.595 kb on - strand at 4449.595 kb on - strand at 4449.595 kb on - strand at 4449.644 kb on - strand at 4449.736 kb on - strand, within ybiR at 4449.736 kb on - strand, within ybiR at 4449.736 kb on - strand, within ybiR at 4449.776 kb on - strand, within ybiR at 4449.776 kb on - strand, within ybiR at 4449.776 kb on - strand, within ybiR at 4449.790 kb on - strand, within ybiR at 4449.807 kb on - strand, within ybiR at 4449.858 kb on + strand, within ybiR at 4449.910 kb on - strand, within ybiR at 4449.924 kb on - strand, within ybiR at 4450.062 kb on - strand, within ybiR at 4450.064 kb on - strand, within ybiR at 4450.064 kb on - strand, within ybiR at 4450.064 kb on - strand, within ybiR at 4450.064 kb on - strand, within ybiR at 4450.064 kb on - strand, within ybiR at 4450.215 kb on - strand, within ybiR at 4450.215 kb on - strand, within ybiR at 4450.251 kb on - strand, within ybiR at 4450.257 kb on - strand, within ybiR at 4450.319 kb on + strand, within ybiR at 4450.365 kb on - strand, within ybiR at 4450.365 kb on - strand, within ybiR at 4450.365 kb on - strand, within ybiR at 4450.382 kb on + strand, within ybiR at 4450.383 kb on - strand, within ybiR at 4450.383 kb on - strand, within ybiR at 4450.413 kb on - strand, within ybiR at 4450.439 kb on + strand, within ybiR at 4450.440 kb on - strand, within ybiR at 4450.618 kb on - strand at 4450.639 kb on - strand at 4450.745 kb on - strand, within mntR at 4451.035 kb on - strand, within mntR at 4451.035 kb on - strand, within mntR at 4451.109 kb on - strand at 4451.181 kb on + strand at 4451.181 kb on + strand at 4451.181 kb on + strand at 4451.181 kb on + strand at 4451.181 kb on + strand at 4451.181 kb on + strand at 4451.182 kb on - strand at 4451.182 kb on - strand at 4451.182 kb on - strand at 4451.182 kb on - strand at 4451.185 kb on + strand at 4451.186 kb on - strand at 4451.186 kb on - strand at 4451.263 kb on + strand at 4451.278 kb on + strand at 4451.278 kb on + strand at 4451.280 kb on + strand at 4451.290 kb on + strand at 4451.290 kb on + strand at 4451.290 kb on + strand at 4451.290 kb on + strand at 4451.290 kb on + strand at 4451.290 kb on + strand at 4451.290 kb on + strand at 4451.291 kb on - strand at 4451.322 kb on + strand at 4451.322 kb on + strand at 4451.340 kb on + strand at 4451.340 kb on + strand at 4451.361 kb on + strand, within mntS at 4451.361 kb on + strand, within mntS at 4451.412 kb on + strand, within mntS at 4451.412 kb on + strand, within mntS at 4451.588 kb on - strand at 4451.634 kb on - strand at 4451.634 kb on - strand at 4451.688 kb on + strand at 4451.688 kb on + strand at 4451.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 4,448,600 - -0.3 4,448,672 + -0.3 4,448,756 + ldtB NOLOHH_22515 0.18 +0.1 4,448,844 + ldtB NOLOHH_22515 0.27 +1.4 4,448,844 + ldtB NOLOHH_22515 0.27 -0.6 4,448,924 + ldtB NOLOHH_22515 0.36 +0.5 4,448,924 + ldtB NOLOHH_22515 0.36 -0.6 4,448,924 + ldtB NOLOHH_22515 0.36 -1.1 4,448,924 + ldtB NOLOHH_22515 0.36 -0.5 4,448,925 - ldtB NOLOHH_22515 0.36 +1.3 4,448,927 + ldtB NOLOHH_22515 0.36 +2.0 4,449,149 + ldtB NOLOHH_22515 0.60 -0.1 4,449,149 + ldtB NOLOHH_22515 0.60 +0.4 4,449,150 - ldtB NOLOHH_22515 0.60 -1.9 4,449,164 + ldtB NOLOHH_22515 0.62 -0.1 4,449,164 + ldtB NOLOHH_22515 0.62 -1.1 4,449,210 + ldtB NOLOHH_22515 0.67 -0.0 4,449,258 + ldtB NOLOHH_22515 0.72 -0.7 4,449,293 - ldtB NOLOHH_22515 0.76 +0.0 4,449,338 + ldtB NOLOHH_22515 0.81 +0.0 4,449,340 + ldtB NOLOHH_22515 0.81 -1.1 4,449,340 + ldtB NOLOHH_22515 0.81 -0.5 4,449,340 + ldtB NOLOHH_22515 0.81 -1.9 4,449,340 + ldtB NOLOHH_22515 0.81 +1.2 4,449,406 + ldtB NOLOHH_22515 0.88 -1.9 4,449,406 + ldtB NOLOHH_22515 0.88 +0.1 4,449,407 - ldtB NOLOHH_22515 0.88 +1.4 4,449,526 + +0.8 4,449,575 - -1.0 4,449,589 - -0.2 4,449,591 - +1.2 4,449,591 - +0.8 4,449,591 - -1.4 4,449,595 - -1.6 4,449,595 - +0.1 4,449,595 - +0.9 4,449,644 - +0.8 4,449,736 - ybiR NOLOHH_22520 0.15 -0.9 4,449,736 - ybiR NOLOHH_22520 0.15 -0.2 4,449,736 - ybiR NOLOHH_22520 0.15 +0.8 4,449,776 - ybiR NOLOHH_22520 0.18 -0.5 4,449,776 - ybiR NOLOHH_22520 0.18 +0.9 4,449,776 - ybiR NOLOHH_22520 0.18 +0.4 4,449,790 - ybiR NOLOHH_22520 0.19 -0.3 4,449,807 - ybiR NOLOHH_22520 0.21 -0.3 4,449,858 + ybiR NOLOHH_22520 0.25 -0.1 4,449,910 - ybiR NOLOHH_22520 0.30 -0.9 4,449,924 - ybiR NOLOHH_22520 0.31 -0.3 4,450,062 - ybiR NOLOHH_22520 0.44 -0.4 4,450,064 - ybiR NOLOHH_22520 0.44 -0.5 4,450,064 - ybiR NOLOHH_22520 0.44 -0.8 4,450,064 - ybiR NOLOHH_22520 0.44 -0.0 4,450,064 - ybiR NOLOHH_22520 0.44 +0.0 4,450,064 - ybiR NOLOHH_22520 0.44 -1.7 4,450,215 - ybiR NOLOHH_22520 0.57 -0.6 4,450,215 - ybiR NOLOHH_22520 0.57 -1.7 4,450,251 - ybiR NOLOHH_22520 0.61 +0.6 4,450,257 - ybiR NOLOHH_22520 0.61 +0.4 4,450,319 + ybiR NOLOHH_22520 0.67 -1.1 4,450,365 - ybiR NOLOHH_22520 0.71 -0.3 4,450,365 - ybiR NOLOHH_22520 0.71 +0.9 4,450,365 - ybiR NOLOHH_22520 0.71 +0.3 4,450,382 + ybiR NOLOHH_22520 0.72 +0.9 4,450,383 - ybiR NOLOHH_22520 0.72 -0.0 4,450,383 - ybiR NOLOHH_22520 0.72 -0.6 4,450,413 - ybiR NOLOHH_22520 0.75 -0.4 4,450,439 + ybiR NOLOHH_22520 0.77 +0.4 4,450,440 - ybiR NOLOHH_22520 0.77 -0.1 4,450,618 - -0.9 4,450,639 - -0.7 4,450,745 - mntR NOLOHH_22525 0.12 -0.1 4,451,035 - mntR NOLOHH_22525 0.74 -0.3 4,451,035 - mntR NOLOHH_22525 0.74 -1.6 4,451,109 - -0.7 4,451,181 + -2.6 4,451,181 + -0.6 4,451,181 + +0.4 4,451,181 + +0.9 4,451,181 + +0.4 4,451,181 + -0.6 4,451,182 - -0.1 4,451,182 - -1.1 4,451,182 - +0.4 4,451,182 - +0.4 4,451,185 + +1.2 4,451,186 - +0.1 4,451,186 - +0.9 4,451,263 + +0.1 4,451,278 + -0.1 4,451,278 + +1.9 4,451,280 + -0.2 4,451,290 + -0.5 4,451,290 + -0.3 4,451,290 + +0.4 4,451,290 + +2.4 4,451,290 + -0.1 4,451,290 + -1.1 4,451,290 + -1.0 4,451,291 - -1.9 4,451,322 + +0.1 4,451,322 + -0.0 4,451,340 + -0.2 4,451,340 + +1.8 4,451,361 + mntS NOLOHH_22530 0.16 +0.0 4,451,361 + mntS NOLOHH_22530 0.16 -0.6 4,451,412 + mntS NOLOHH_22530 0.55 +0.4 4,451,412 + mntS NOLOHH_22530 0.55 +0.2 4,451,588 - +1.0 4,451,634 - -0.5 4,451,634 - +2.2 4,451,688 + +2.4 4,451,688 + -0.6 4,451,689 - -0.1
Or see this region's nucleotide sequence