Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22245

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpoxB and ltaE are separated by 36 nucleotidesltaE and ybjT are separated by 10 nucleotides NOLOHH_22240: poxB - ubiquinone-dependent pyruvate dehydrogenase, at 4,392,038 to 4,393,756 poxB NOLOHH_22245: ltaE - low-specificity L-threonine aldolase, at 4,393,793 to 4,394,794 ltaE NOLOHH_22250: ybjT - Putative NAD(P)-binding protein YbjT, at 4,394,805 to 4,396,235 ybjT Position (kb) 4393 4394 4395Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4392.839 kb on - strand, within poxBat 4393.087 kb on + strand, within poxBat 4393.165 kb on + strand, within poxBat 4393.206 kb on - strand, within poxBat 4393.236 kb on + strand, within poxBat 4393.345 kb on + strand, within poxBat 4393.460 kb on + strand, within poxBat 4393.682 kb on + strandat 4393.683 kb on - strandat 4393.683 kb on - strandat 4393.683 kb on - strandat 4393.683 kb on - strandat 4393.683 kb on - strandat 4393.684 kb on + strandat 4393.684 kb on + strandat 4393.684 kb on + strandat 4393.684 kb on + strandat 4393.685 kb on - strandat 4393.685 kb on - strandat 4393.685 kb on - strandat 4393.685 kb on - strandat 4393.685 kb on - strandat 4393.778 kb on + strandat 4393.781 kb on + strandat 4393.782 kb on - strandat 4393.803 kb on + strandat 4393.916 kb on + strand, within ltaEat 4393.916 kb on + strand, within ltaEat 4393.917 kb on - strand, within ltaEat 4394.018 kb on + strand, within ltaEat 4394.018 kb on + strand, within ltaEat 4394.018 kb on + strand, within ltaEat 4394.018 kb on + strand, within ltaEat 4394.019 kb on - strand, within ltaEat 4394.019 kb on - strand, within ltaEat 4394.019 kb on - strand, within ltaEat 4394.019 kb on - strand, within ltaEat 4394.020 kb on + strand, within ltaEat 4394.020 kb on + strand, within ltaEat 4394.021 kb on - strand, within ltaEat 4394.021 kb on - strand, within ltaEat 4394.021 kb on - strand, within ltaEat 4394.021 kb on - strand, within ltaEat 4394.021 kb on - strand, within ltaEat 4394.042 kb on - strand, within ltaEat 4394.042 kb on - strand, within ltaEat 4394.042 kb on - strand, within ltaEat 4394.045 kb on + strand, within ltaEat 4394.045 kb on + strand, within ltaEat 4394.046 kb on - strand, within ltaEat 4394.187 kb on + strand, within ltaEat 4394.429 kb on + strand, within ltaEat 4394.429 kb on + strand, within ltaEat 4394.434 kb on + strand, within ltaEat 4394.434 kb on + strand, within ltaEat 4394.510 kb on + strand, within ltaEat 4394.510 kb on + strand, within ltaEat 4394.510 kb on + strand, within ltaEat 4394.510 kb on + strand, within ltaEat 4394.510 kb on + strand, within ltaEat 4394.510 kb on + strand, within ltaEat 4394.511 kb on - strand, within ltaEat 4394.511 kb on - strand, within ltaEat 4394.617 kb on + strand, within ltaEat 4394.617 kb on + strand, within ltaEat 4394.618 kb on - strand, within ltaEat 4394.620 kb on + strand, within ltaEat 4394.620 kb on + strand, within ltaEat 4394.620 kb on + strand, within ltaEat 4394.669 kb on + strand, within ltaEat 4394.821 kb on + strandat 4394.822 kb on - strandat 4395.107 kb on - strand, within ybjTat 4395.114 kb on - strand, within ybjTat 4395.245 kb on + strand, within ybjTat 4395.295 kb on - strand, within ybjTat 4395.373 kb on - strand, within ybjTat 4395.389 kb on - strand, within ybjTat 4395.389 kb on - strand, within ybjTat 4395.389 kb on - strand, within ybjTat 4395.447 kb on + strand, within ybjTat 4395.448 kb on - strand, within ybjTat 4395.555 kb on - strand, within ybjTat 4395.794 kb on + strand, within ybjT

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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4,392,839 - poxB NOLOHH_22240 0.47 -1.6
4,393,087 + poxB NOLOHH_22240 0.61 +0.2
4,393,165 + poxB NOLOHH_22240 0.66 -0.4
4,393,206 - poxB NOLOHH_22240 0.68 +0.6
4,393,236 + poxB NOLOHH_22240 0.70 +0.8
4,393,345 + poxB NOLOHH_22240 0.76 +0.7
4,393,460 + poxB NOLOHH_22240 0.83 +1.4
4,393,682 + -0.6
4,393,683 - +0.4
4,393,683 - +1.1
4,393,683 - -0.6
4,393,683 - -0.9
4,393,683 - -0.6
4,393,684 + +0.8
4,393,684 + -0.7
4,393,684 + -0.4
4,393,684 + +0.8
4,393,685 - +0.4
4,393,685 - +0.1
4,393,685 - -0.5
4,393,685 - +0.4
4,393,685 - +1.6
4,393,778 + +0.7
4,393,781 + +0.1
4,393,782 - +0.4
4,393,803 + +0.4
4,393,916 + ltaE NOLOHH_22245 0.12 -0.1
4,393,916 + ltaE NOLOHH_22245 0.12 +0.7
4,393,917 - ltaE NOLOHH_22245 0.12 -0.0
4,394,018 + ltaE NOLOHH_22245 0.22 -1.7
4,394,018 + ltaE NOLOHH_22245 0.22 -0.2
4,394,018 + ltaE NOLOHH_22245 0.22 +0.4
4,394,018 + ltaE NOLOHH_22245 0.22 +1.4
4,394,019 - ltaE NOLOHH_22245 0.23 +0.2
4,394,019 - ltaE NOLOHH_22245 0.23 -0.6
4,394,019 - ltaE NOLOHH_22245 0.23 -1.2
4,394,019 - ltaE NOLOHH_22245 0.23 +0.8
4,394,020 + ltaE NOLOHH_22245 0.23 -3.2
4,394,020 + ltaE NOLOHH_22245 0.23 -2.6
4,394,021 - ltaE NOLOHH_22245 0.23 -0.3
4,394,021 - ltaE NOLOHH_22245 0.23 -1.6
4,394,021 - ltaE NOLOHH_22245 0.23 +0.7
4,394,021 - ltaE NOLOHH_22245 0.23 -1.6
4,394,021 - ltaE NOLOHH_22245 0.23 -0.0
4,394,042 - ltaE NOLOHH_22245 0.25 +0.8
4,394,042 - ltaE NOLOHH_22245 0.25 +0.4
4,394,042 - ltaE NOLOHH_22245 0.25 -1.6
4,394,045 + ltaE NOLOHH_22245 0.25 -0.6
4,394,045 + ltaE NOLOHH_22245 0.25 +0.4
4,394,046 - ltaE NOLOHH_22245 0.25 +0.4
4,394,187 + ltaE NOLOHH_22245 0.39 +1.0
4,394,429 + ltaE NOLOHH_22245 0.63 +2.0
4,394,429 + ltaE NOLOHH_22245 0.63 +0.7
4,394,434 + ltaE NOLOHH_22245 0.64 +1.0
4,394,434 + ltaE NOLOHH_22245 0.64 -0.1
4,394,510 + ltaE NOLOHH_22245 0.72 -0.3
4,394,510 + ltaE NOLOHH_22245 0.72 +1.4
4,394,510 + ltaE NOLOHH_22245 0.72 -0.6
4,394,510 + ltaE NOLOHH_22245 0.72 +0.4
4,394,510 + ltaE NOLOHH_22245 0.72 -0.4
4,394,510 + ltaE NOLOHH_22245 0.72 +0.6
4,394,511 - ltaE NOLOHH_22245 0.72 +0.1
4,394,511 - ltaE NOLOHH_22245 0.72 -0.6
4,394,617 + ltaE NOLOHH_22245 0.82 +1.0
4,394,617 + ltaE NOLOHH_22245 0.82 -0.9
4,394,618 - ltaE NOLOHH_22245 0.82 -0.0
4,394,620 + ltaE NOLOHH_22245 0.83 +0.4
4,394,620 + ltaE NOLOHH_22245 0.83 -1.6
4,394,620 + ltaE NOLOHH_22245 0.83 -0.3
4,394,669 + ltaE NOLOHH_22245 0.87 +0.4
4,394,821 + -1.0
4,394,822 - -0.3
4,395,107 - ybjT NOLOHH_22250 0.21 -0.2
4,395,114 - ybjT NOLOHH_22250 0.22 -0.0
4,395,245 + ybjT NOLOHH_22250 0.31 -1.3
4,395,295 - ybjT NOLOHH_22250 0.34 +0.8
4,395,373 - ybjT NOLOHH_22250 0.40 -0.0
4,395,389 - ybjT NOLOHH_22250 0.41 +0.1
4,395,389 - ybjT NOLOHH_22250 0.41 -1.2
4,395,389 - ybjT NOLOHH_22250 0.41 +0.1
4,395,447 + ybjT NOLOHH_22250 0.45 +2.0
4,395,448 - ybjT NOLOHH_22250 0.45 +1.0
4,395,555 - ybjT NOLOHH_22250 0.52 -0.1
4,395,794 + ybjT NOLOHH_22250 0.69 +1.0

Or see this region's nucleotide sequence