Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt poxB and ltaE are separated by 36 nucleotides ltaE and ybjT are separated by 10 nucleotides
NOLOHH_22240: poxB - ubiquinone-dependent pyruvate dehydrogenase, at 4,392,038 to 4,393,756
poxB
NOLOHH_22245: ltaE - low-specificity L-threonine aldolase, at 4,393,793 to 4,394,794
ltaE
NOLOHH_22250: ybjT - Putative NAD(P)-binding protein YbjT, at 4,394,805 to 4,396,235
ybjT
Position (kb)
4393
4394
4395 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4392.839 kb on - strand, within poxB at 4393.087 kb on + strand, within poxB at 4393.165 kb on + strand, within poxB at 4393.206 kb on - strand, within poxB at 4393.236 kb on + strand, within poxB at 4393.345 kb on + strand, within poxB at 4393.460 kb on + strand, within poxB at 4393.682 kb on + strand at 4393.683 kb on - strand at 4393.683 kb on - strand at 4393.683 kb on - strand at 4393.683 kb on - strand at 4393.683 kb on - strand at 4393.684 kb on + strand at 4393.684 kb on + strand at 4393.684 kb on + strand at 4393.684 kb on + strand at 4393.685 kb on - strand at 4393.685 kb on - strand at 4393.685 kb on - strand at 4393.685 kb on - strand at 4393.685 kb on - strand at 4393.778 kb on + strand at 4393.781 kb on + strand at 4393.782 kb on - strand at 4393.803 kb on + strand at 4393.916 kb on + strand, within ltaE at 4393.916 kb on + strand, within ltaE at 4393.917 kb on - strand, within ltaE at 4394.018 kb on + strand, within ltaE at 4394.018 kb on + strand, within ltaE at 4394.018 kb on + strand, within ltaE at 4394.018 kb on + strand, within ltaE at 4394.019 kb on - strand, within ltaE at 4394.019 kb on - strand, within ltaE at 4394.019 kb on - strand, within ltaE at 4394.019 kb on - strand, within ltaE at 4394.020 kb on + strand, within ltaE at 4394.020 kb on + strand, within ltaE at 4394.021 kb on - strand, within ltaE at 4394.021 kb on - strand, within ltaE at 4394.021 kb on - strand, within ltaE at 4394.021 kb on - strand, within ltaE at 4394.021 kb on - strand, within ltaE at 4394.042 kb on - strand, within ltaE at 4394.042 kb on - strand, within ltaE at 4394.042 kb on - strand, within ltaE at 4394.045 kb on + strand, within ltaE at 4394.045 kb on + strand, within ltaE at 4394.046 kb on - strand, within ltaE at 4394.187 kb on + strand, within ltaE at 4394.429 kb on + strand, within ltaE at 4394.429 kb on + strand, within ltaE at 4394.434 kb on + strand, within ltaE at 4394.434 kb on + strand, within ltaE at 4394.510 kb on + strand, within ltaE at 4394.510 kb on + strand, within ltaE at 4394.510 kb on + strand, within ltaE at 4394.510 kb on + strand, within ltaE at 4394.510 kb on + strand, within ltaE at 4394.510 kb on + strand, within ltaE at 4394.511 kb on - strand, within ltaE at 4394.511 kb on - strand, within ltaE at 4394.617 kb on + strand, within ltaE at 4394.617 kb on + strand, within ltaE at 4394.618 kb on - strand, within ltaE at 4394.620 kb on + strand, within ltaE at 4394.620 kb on + strand, within ltaE at 4394.620 kb on + strand, within ltaE at 4394.669 kb on + strand, within ltaE at 4394.821 kb on + strand at 4394.822 kb on - strand at 4395.107 kb on - strand, within ybjT at 4395.114 kb on - strand, within ybjT at 4395.245 kb on + strand, within ybjT at 4395.295 kb on - strand, within ybjT at 4395.373 kb on - strand, within ybjT at 4395.389 kb on - strand, within ybjT at 4395.389 kb on - strand, within ybjT at 4395.389 kb on - strand, within ybjT at 4395.447 kb on + strand, within ybjT at 4395.448 kb on - strand, within ybjT at 4395.555 kb on - strand, within ybjT at 4395.794 kb on + strand, within ybjT
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 4,392,839 - poxB NOLOHH_22240 0.47 -1.6 4,393,087 + poxB NOLOHH_22240 0.61 +0.2 4,393,165 + poxB NOLOHH_22240 0.66 -0.4 4,393,206 - poxB NOLOHH_22240 0.68 +0.6 4,393,236 + poxB NOLOHH_22240 0.70 +0.8 4,393,345 + poxB NOLOHH_22240 0.76 +0.7 4,393,460 + poxB NOLOHH_22240 0.83 +1.4 4,393,682 + -0.6 4,393,683 - +0.4 4,393,683 - +1.1 4,393,683 - -0.6 4,393,683 - -0.9 4,393,683 - -0.6 4,393,684 + +0.8 4,393,684 + -0.7 4,393,684 + -0.4 4,393,684 + +0.8 4,393,685 - +0.4 4,393,685 - +0.1 4,393,685 - -0.5 4,393,685 - +0.4 4,393,685 - +1.6 4,393,778 + +0.7 4,393,781 + +0.1 4,393,782 - +0.4 4,393,803 + +0.4 4,393,916 + ltaE NOLOHH_22245 0.12 -0.1 4,393,916 + ltaE NOLOHH_22245 0.12 +0.7 4,393,917 - ltaE NOLOHH_22245 0.12 -0.0 4,394,018 + ltaE NOLOHH_22245 0.22 -1.7 4,394,018 + ltaE NOLOHH_22245 0.22 -0.2 4,394,018 + ltaE NOLOHH_22245 0.22 +0.4 4,394,018 + ltaE NOLOHH_22245 0.22 +1.4 4,394,019 - ltaE NOLOHH_22245 0.23 +0.2 4,394,019 - ltaE NOLOHH_22245 0.23 -0.6 4,394,019 - ltaE NOLOHH_22245 0.23 -1.2 4,394,019 - ltaE NOLOHH_22245 0.23 +0.8 4,394,020 + ltaE NOLOHH_22245 0.23 -3.2 4,394,020 + ltaE NOLOHH_22245 0.23 -2.6 4,394,021 - ltaE NOLOHH_22245 0.23 -0.3 4,394,021 - ltaE NOLOHH_22245 0.23 -1.6 4,394,021 - ltaE NOLOHH_22245 0.23 +0.7 4,394,021 - ltaE NOLOHH_22245 0.23 -1.6 4,394,021 - ltaE NOLOHH_22245 0.23 -0.0 4,394,042 - ltaE NOLOHH_22245 0.25 +0.8 4,394,042 - ltaE NOLOHH_22245 0.25 +0.4 4,394,042 - ltaE NOLOHH_22245 0.25 -1.6 4,394,045 + ltaE NOLOHH_22245 0.25 -0.6 4,394,045 + ltaE NOLOHH_22245 0.25 +0.4 4,394,046 - ltaE NOLOHH_22245 0.25 +0.4 4,394,187 + ltaE NOLOHH_22245 0.39 +1.0 4,394,429 + ltaE NOLOHH_22245 0.63 +2.0 4,394,429 + ltaE NOLOHH_22245 0.63 +0.7 4,394,434 + ltaE NOLOHH_22245 0.64 +1.0 4,394,434 + ltaE NOLOHH_22245 0.64 -0.1 4,394,510 + ltaE NOLOHH_22245 0.72 -0.3 4,394,510 + ltaE NOLOHH_22245 0.72 +1.4 4,394,510 + ltaE NOLOHH_22245 0.72 -0.6 4,394,510 + ltaE NOLOHH_22245 0.72 +0.4 4,394,510 + ltaE NOLOHH_22245 0.72 -0.4 4,394,510 + ltaE NOLOHH_22245 0.72 +0.6 4,394,511 - ltaE NOLOHH_22245 0.72 +0.1 4,394,511 - ltaE NOLOHH_22245 0.72 -0.6 4,394,617 + ltaE NOLOHH_22245 0.82 +1.0 4,394,617 + ltaE NOLOHH_22245 0.82 -0.9 4,394,618 - ltaE NOLOHH_22245 0.82 -0.0 4,394,620 + ltaE NOLOHH_22245 0.83 +0.4 4,394,620 + ltaE NOLOHH_22245 0.83 -1.6 4,394,620 + ltaE NOLOHH_22245 0.83 -0.3 4,394,669 + ltaE NOLOHH_22245 0.87 +0.4 4,394,821 + -1.0 4,394,822 - -0.3 4,395,107 - ybjT NOLOHH_22250 0.21 -0.2 4,395,114 - ybjT NOLOHH_22250 0.22 -0.0 4,395,245 + ybjT NOLOHH_22250 0.31 -1.3 4,395,295 - ybjT NOLOHH_22250 0.34 +0.8 4,395,373 - ybjT NOLOHH_22250 0.40 -0.0 4,395,389 - ybjT NOLOHH_22250 0.41 +0.1 4,395,389 - ybjT NOLOHH_22250 0.41 -1.2 4,395,389 - ybjT NOLOHH_22250 0.41 +0.1 4,395,447 + ybjT NOLOHH_22250 0.45 +2.0 4,395,448 - ybjT NOLOHH_22250 0.45 +1.0 4,395,555 - ybjT NOLOHH_22250 0.52 -0.1 4,395,794 + ybjT NOLOHH_22250 0.69 +1.0
Or see this region's nucleotide sequence