Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pyrC and dinI are separated by 73 nucleotides dinI and bssS are separated by 289 nucleotides bssS and solA are separated by 114 nucleotides solA and yceO are separated by 47 nucleotides yceO and yceJ are separated by 260 nucleotides yceJ and yceI are separated by 3 nucleotides
NOLOHH_21260: pyrC - dihydroorotase, at 4,181,443 to 4,182,489
pyrC
NOLOHH_21265: dinI - DNA damage-inducible protein I, at 4,182,563 to 4,182,808
dinI
NOLOHH_21270: bssS - biofilm formation regulator BssS, at 4,183,098 to 4,183,352
bssS
NOLOHH_21275: solA - N-methyl-L-tryptophan oxidase, at 4,183,467 to 4,184,585
solA
NOLOHH_21280: yceO - Uncharacterized protein YceO, at 4,184,633 to 4,184,746
yceO
NOLOHH_21285: yceJ - Cytochrome b561-like protein, at 4,185,007 to 4,185,573
yceJ
NOLOHH_21290: yceI - YceI family protein, at 4,185,577 to 4,186,152
yceI
Position (kb) 4183
4184
4185 Strain fitness (log2 ratio) -1
0
1
2 at 4182.513 kb on + strand at 4182.559 kb on + strand at 4182.583 kb on - strand at 4182.668 kb on - strand, within dinI at 4182.681 kb on + strand, within dinI at 4182.809 kb on + strand at 4182.809 kb on + strand at 4182.857 kb on - strand at 4183.012 kb on - strand at 4183.015 kb on + strand at 4183.015 kb on + strand at 4183.021 kb on + strand at 4183.023 kb on + strand at 4183.073 kb on + strand at 4183.073 kb on + strand at 4183.074 kb on - strand at 4183.167 kb on + strand, within bssS at 4183.208 kb on + strand, within bssS at 4183.208 kb on + strand, within bssS at 4183.288 kb on + strand, within bssS at 4183.413 kb on - strand at 4183.474 kb on - strand at 4183.524 kb on + strand at 4183.525 kb on - strand at 4183.852 kb on + strand, within solA at 4183.853 kb on - strand, within solA at 4183.869 kb on + strand, within solA at 4183.870 kb on - strand, within solA at 4183.870 kb on - strand, within solA at 4183.870 kb on - strand, within solA at 4183.870 kb on - strand, within solA at 4183.870 kb on - strand, within solA at 4183.879 kb on + strand, within solA at 4183.922 kb on + strand, within solA at 4184.011 kb on + strand, within solA at 4184.015 kb on + strand, within solA at 4184.113 kb on + strand, within solA at 4184.117 kb on + strand, within solA at 4184.208 kb on + strand, within solA at 4184.255 kb on + strand, within solA at 4184.350 kb on + strand, within solA at 4184.350 kb on + strand, within solA at 4184.394 kb on + strand, within solA at 4184.512 kb on + strand at 4184.663 kb on - strand, within yceO at 4185.006 kb on + strand at 4185.042 kb on + strand at 4185.075 kb on + strand, within yceJ at 4185.298 kb on + strand, within yceJ at 4185.298 kb on + strand, within yceJ at 4185.302 kb on + strand, within yceJ at 4185.464 kb on + strand, within yceJ at 4185.464 kb on + strand, within yceJ at 4185.467 kb on + strand, within yceJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 4,182,513 + +0.1 4,182,559 + -0.1 4,182,583 - +2.7 4,182,668 - dinI NOLOHH_21265 0.43 +2.7 4,182,681 + dinI NOLOHH_21265 0.48 +0.1 4,182,809 + +0.7 4,182,809 + +1.3 4,182,857 - -0.7 4,183,012 - -0.7 4,183,015 + -0.8 4,183,015 + -0.7 4,183,021 + +0.3 4,183,023 + -1.4 4,183,073 + +0.5 4,183,073 + -1.0 4,183,074 - +0.8 4,183,167 + bssS NOLOHH_21270 0.27 +0.8 4,183,208 + bssS NOLOHH_21270 0.43 +0.6 4,183,208 + bssS NOLOHH_21270 0.43 +0.3 4,183,288 + bssS NOLOHH_21270 0.75 +0.1 4,183,413 - +0.2 4,183,474 - +1.3 4,183,524 + +0.6 4,183,525 - +0.3 4,183,852 + solA NOLOHH_21275 0.34 +1.3 4,183,853 - solA NOLOHH_21275 0.34 +0.1 4,183,869 + solA NOLOHH_21275 0.36 -0.1 4,183,870 - solA NOLOHH_21275 0.36 -0.1 4,183,870 - solA NOLOHH_21275 0.36 +0.3 4,183,870 - solA NOLOHH_21275 0.36 +1.3 4,183,870 - solA NOLOHH_21275 0.36 +0.8 4,183,870 - solA NOLOHH_21275 0.36 +0.3 4,183,879 + solA NOLOHH_21275 0.37 -0.4 4,183,922 + solA NOLOHH_21275 0.41 +1.9 4,184,011 + solA NOLOHH_21275 0.49 +0.1 4,184,015 + solA NOLOHH_21275 0.49 -0.7 4,184,113 + solA NOLOHH_21275 0.58 +0.3 4,184,117 + solA NOLOHH_21275 0.58 -0.7 4,184,208 + solA NOLOHH_21275 0.66 +0.9 4,184,255 + solA NOLOHH_21275 0.70 +0.5 4,184,350 + solA NOLOHH_21275 0.79 -0.9 4,184,350 + solA NOLOHH_21275 0.79 -0.1 4,184,394 + solA NOLOHH_21275 0.83 -1.2 4,184,512 + +1.3 4,184,663 - yceO NOLOHH_21280 0.26 -1.2 4,185,006 + +0.3 4,185,042 + +0.8 4,185,075 + yceJ NOLOHH_21285 0.12 +0.9 4,185,298 + yceJ NOLOHH_21285 0.51 +1.3 4,185,298 + yceJ NOLOHH_21285 0.51 +0.8 4,185,302 + yceJ NOLOHH_21285 0.52 -0.1 4,185,464 + yceJ NOLOHH_21285 0.81 +0.0 4,185,464 + yceJ NOLOHH_21285 0.81 +1.1 4,185,467 + yceJ NOLOHH_21285 0.81 +0.3
Or see this region's nucleotide sequence