Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19090

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarZ and narH overlap by 4 nucleotidesnarH and narW overlap by 1 nucleotidesnarW and narI overlap by 4 nucleotides NOLOHH_19085: narZ - nitrate reductase Z subunit alpha, at 3,752,171 to 3,755,911 narZ NOLOHH_19090: narH - nitrate reductase subunit beta, at 3,755,908 to 3,757,452 narH NOLOHH_19095: narW - nitrate reductase molybdenum cofactor assembly chaperone, at 3,757,452 to 3,758,147 narW NOLOHH_19100: narI - respiratory nitrate reductase subunit gamma, at 3,758,144 to 3,758,824 narI Position (kb) 3755 3756 3757 3758Strain fitness (log2 ratio) -2 -1 0 1at 3754.964 kb on + strand, within narZat 3755.471 kb on + strand, within narZat 3755.654 kb on + strandat 3755.655 kb on - strandat 3755.655 kb on - strandat 3755.697 kb on + strandat 3755.698 kb on - strandat 3755.758 kb on + strandat 3755.759 kb on - strandat 3756.264 kb on + strand, within narHat 3756.508 kb on + strand, within narHat 3756.853 kb on - strand, within narHat 3756.853 kb on - strand, within narHat 3757.083 kb on + strand, within narHat 3757.152 kb on + strand, within narHat 3757.243 kb on + strand, within narHat 3757.723 kb on - strand, within narWat 3757.771 kb on + strand, within narWat 3757.870 kb on + strand, within narWat 3757.933 kb on + strand, within narWat 3758.180 kb on + strandat 3758.243 kb on + strand, within narIat 3758.375 kb on + strand, within narI

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,754,964 + narZ NOLOHH_19085 0.75 -2.3
3,755,471 + narZ NOLOHH_19085 0.88 +0.3
3,755,654 + -0.3
3,755,655 - +0.9
3,755,655 - +0.8
3,755,697 + -0.3
3,755,698 - +1.3
3,755,758 + +0.3
3,755,759 - -1.3
3,756,264 + narH NOLOHH_19090 0.23 -0.4
3,756,508 + narH NOLOHH_19090 0.39 +0.0
3,756,853 - narH NOLOHH_19090 0.61 -0.7
3,756,853 - narH NOLOHH_19090 0.61 +0.3
3,757,083 + narH NOLOHH_19090 0.76 +1.1
3,757,152 + narH NOLOHH_19090 0.81 -0.7
3,757,243 + narH NOLOHH_19090 0.86 +0.3
3,757,723 - narW NOLOHH_19095 0.39 -0.4
3,757,771 + narW NOLOHH_19095 0.46 -0.3
3,757,870 + narW NOLOHH_19095 0.60 -1.3
3,757,933 + narW NOLOHH_19095 0.69 -0.7
3,758,180 + -0.7
3,758,243 + narI NOLOHH_19100 0.15 -0.3
3,758,375 + narI NOLOHH_19100 0.34 -0.3

Or see this region's nucleotide sequence