Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18680

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeE and eamA are separated by 194 nucleotideseamA and NOLOHH_18685 are separated by 44 nucleotidesNOLOHH_18685 and NOLOHH_18690 are separated by 198 nucleotides NOLOHH_18675: ydeE - efflux MFS transporter YdeE, at 3,655,814 to 3,657,001 ydeE NOLOHH_18680: eamA - O-acetylserine/cysteine exporter, at 3,657,196 to 3,658,095 eamA NOLOHH_18685: NOLOHH_18685 - GntR family transcriptional regulator, at 3,658,140 to 3,658,838 _18685 NOLOHH_18690: NOLOHH_18690 - PTS sugar transporter subunit IIB, at 3,659,037 to 3,659,348 _18690 Position (kb) 3657 3658 3659Strain fitness (log2 ratio) -2 -1 0 1 2at 3656.227 kb on + strand, within ydeEat 3656.227 kb on + strand, within ydeEat 3656.590 kb on - strand, within ydeEat 3656.904 kb on + strandat 3656.926 kb on + strandat 3657.098 kb on - strandat 3657.098 kb on - strandat 3657.098 kb on - strandat 3657.392 kb on + strand, within eamAat 3657.492 kb on + strand, within eamAat 3657.594 kb on + strand, within eamAat 3657.630 kb on + strand, within eamAat 3657.851 kb on - strand, within eamAat 3657.977 kb on + strand, within eamAat 3658.029 kb on + strandat 3658.042 kb on + strandat 3658.052 kb on + strandat 3658.052 kb on + strandat 3658.649 kb on - strand, within NOLOHH_18685at 3658.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,656,227 + ydeE NOLOHH_18675 0.35 +0.3
3,656,227 + ydeE NOLOHH_18675 0.35 -0.1
3,656,590 - ydeE NOLOHH_18675 0.65 +2.3
3,656,904 + -1.3
3,656,926 + -1.3
3,657,098 - -0.7
3,657,098 - +0.6
3,657,098 - +0.3
3,657,392 + eamA NOLOHH_18680 0.22 +0.3
3,657,492 + eamA NOLOHH_18680 0.33 +0.3
3,657,594 + eamA NOLOHH_18680 0.44 -2.1
3,657,630 + eamA NOLOHH_18680 0.48 +0.6
3,657,851 - eamA NOLOHH_18680 0.73 +0.3
3,657,977 + eamA NOLOHH_18680 0.87 +1.3
3,658,029 + +0.3
3,658,042 + -0.7
3,658,052 + +0.3
3,658,052 + -0.1
3,658,649 - NOLOHH_18685 0.73 -1.1
3,658,975 - -1.3

Or see this region's nucleotide sequence