Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18640

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydfZ and ydfH are separated by 177 nucleotidesydfH and ydfG are separated by 88 nucleotidesydfG and dcp are separated by 136 nucleotides NOLOHH_18630: ydfZ - Putative selenoprotein YdfZ, at 3,648,913 to 3,649,116 ydfZ NOLOHH_18635: ydfH - DNA-binding transcriptional regulator YdfH, at 3,649,294 to 3,649,980 ydfH NOLOHH_18640: ydfG - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 3,650,069 to 3,650,815 ydfG NOLOHH_18645: dcp - peptidyl-dipeptidase Dcp, at 3,650,952 to 3,652,997 dcp Position (kb) 3650 3651Strain fitness (log2 ratio) -2 -1 0 1at 3649.810 kb on - strand, within ydfHat 3650.405 kb on - strand, within ydfGat 3650.480 kb on - strand, within ydfGat 3650.482 kb on - strand, within ydfGat 3650.671 kb on - strand, within ydfGat 3650.918 kb on - strandat 3651.155 kb on - strandat 3651.266 kb on + strand, within dcpat 3651.266 kb on + strand, within dcpat 3651.270 kb on + strand, within dcp

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,649,810 - ydfH NOLOHH_18635 0.75 -2.5
3,650,405 - ydfG NOLOHH_18640 0.45 +0.3
3,650,480 - ydfG NOLOHH_18640 0.55 +0.3
3,650,482 - ydfG NOLOHH_18640 0.55 +1.3
3,650,671 - ydfG NOLOHH_18640 0.81 +0.3
3,650,918 - +0.3
3,651,155 - +0.8
3,651,266 + dcp NOLOHH_18645 0.15 -1.3
3,651,266 + dcp NOLOHH_18645 0.15 +0.3
3,651,270 + dcp NOLOHH_18645 0.16 -2.3

Or see this region's nucleotide sequence