Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18620

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydfK and ydfJ are separated by 785 nucleotidesydfJ and ydfI are separated by 88 nucleotides NOLOHH_18615: ydfK - cold shock protein YdfK, at 3,645,026 to 3,645,259 ydfK NOLOHH_18620: ydfJ - Putative transporter YdfJ, at 3,646,045 to 3,647,328 ydfJ NOLOHH_18625: ydfI - Uncharacterized oxidoreductase YdfI, at 3,647,417 to 3,648,877 ydfI Position (kb) 3646 3647 3648Strain fitness (log2 ratio) -1 0 1 2at 3645.611 kb on - strandat 3645.655 kb on + strandat 3645.699 kb on + strandat 3645.704 kb on + strandat 3645.706 kb on + strandat 3645.821 kb on - strandat 3645.913 kb on + strandat 3645.915 kb on + strandat 3646.902 kb on + strand, within ydfJat 3646.902 kb on + strand, within ydfJat 3646.957 kb on + strand, within ydfJat 3647.297 kb on + strandat 3647.297 kb on + strandat 3647.373 kb on + strandat 3647.385 kb on + strandat 3647.580 kb on - strand, within ydfIat 3648.055 kb on + strand, within ydfIat 3648.199 kb on + strand, within ydfI

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,645,611 - -0.4
3,645,655 + -1.3
3,645,699 + -1.4
3,645,704 + +0.3
3,645,706 + -1.7
3,645,821 - +1.3
3,645,913 + +0.3
3,645,915 + +0.3
3,646,902 + ydfJ NOLOHH_18620 0.67 +0.3
3,646,902 + ydfJ NOLOHH_18620 0.67 +0.8
3,646,957 + ydfJ NOLOHH_18620 0.71 -0.7
3,647,297 + +2.3
3,647,297 + -0.3
3,647,373 + -0.7
3,647,385 + +0.3
3,647,580 - ydfI NOLOHH_18625 0.11 +0.3
3,648,055 + ydfI NOLOHH_18625 0.44 -0.7
3,648,199 + ydfI NOLOHH_18625 0.54 -1.7

Or see this region's nucleotide sequence