Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17790

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsufD and sufS overlap by 4 nucleotidessufS and sufE are separated by 12 nucleotidessufE and ldtE are separated by 148 nucleotides NOLOHH_17785: sufD - Fe-S cluster assembly protein SufD, at 3,491,427 to 3,492,698 sufD NOLOHH_17790: sufS - cysteine desulfurase SufS, at 3,492,695 to 3,493,915 sufS NOLOHH_17795: sufE - cysteine desulfuration protein SufE, at 3,493,928 to 3,494,344 sufE NOLOHH_17800: ldtE - L,D-transpeptidase LdtE, at 3,494,493 to 3,495,497 ldtE Position (kb) 3492 3493 3494Strain fitness (log2 ratio) -1 0 1 2 3at 3491.887 kb on + strand, within sufDat 3492.546 kb on + strand, within sufDat 3492.877 kb on - strand, within sufSat 3493.369 kb on + strand, within sufSat 3493.403 kb on + strand, within sufSat 3493.571 kb on + strand, within sufSat 3493.594 kb on + strand, within sufSat 3493.847 kb on + strandat 3494.008 kb on + strand, within sufEat 3494.065 kb on + strand, within sufEat 3494.342 kb on + strandat 3494.478 kb on + strandat 3494.857 kb on + strand, within ldtEat 3494.857 kb on + strand, within ldtEat 3494.861 kb on + strand, within ldtE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,491,887 + sufD NOLOHH_17785 0.36 +0.2
3,492,546 + sufD NOLOHH_17785 0.88 -0.5
3,492,877 - sufS NOLOHH_17790 0.15 +0.1
3,493,369 + sufS NOLOHH_17790 0.55 +1.2
3,493,403 + sufS NOLOHH_17790 0.58 -0.8
3,493,571 + sufS NOLOHH_17790 0.72 +2.8
3,493,594 + sufS NOLOHH_17790 0.74 +2.2
3,493,847 + -0.4
3,494,008 + sufE NOLOHH_17795 0.19 +1.8
3,494,065 + sufE NOLOHH_17795 0.33 +0.2
3,494,342 + -0.0
3,494,478 + +0.8
3,494,857 + ldtE NOLOHH_17800 0.36 -1.0
3,494,857 + ldtE NOLOHH_17800 0.36 -0.8
3,494,861 + ldtE NOLOHH_17800 0.37 +0.2

Or see this region's nucleotide sequence